#!/bin/bash
#$Id: cvsci_run 20244 2013-03-12 22:07:45Z AxelBrandenburg $
#
#  This script adds a new run to the repository
#  and checks in all *.in files as well as material
#  from the data and src directories.
#
#  if this procedure is called with an argument,
#  then first go into this directory and continue from there
#
#
#
if (("$#" >= 1)); then
  dirlist=$@
else
  dirlist=$PWD
fi

for pdir in  $dirlist ; do
  cd "$pdir"

#IL
if [[ "$(basename $0)" == "tar_run_bash" ]] ; then
        cvsci=0
        add_cmd="tar -f $PWD.a --ignore-failed-read --append"
        add_data_opt=('--transform s,^,data/,')
        add_cmd_bin="$add_cmd"
        tar cf $PWD.a run.in
        tar --delete --file=$PWD.a run.in
else
        cvsci=1
        add_cmd="cvs add"
        add_cmd_bin="$add_cmd -kb"
        add_data_opt=""
fi

#
#  set directory
#
  CWD=$PWD
  dir=$(basename $PWD)

#
#  go one up add add our run directory to cvs
#
if [ $cvsci ] ; then
        cd ..
        $add_cmd $dir
        cd $dir
fi
#
#  add directories and files to cvs
#  also get a copy of their time stamps before checking in
#
ls -l *.in *.dat *.pro src/*.local > .log
$add_cmd *.in alpha_in.dat k.dat k_double.dat kvect.dat parameters.pro testfield_info.dat chemistry*.dat chem.inp tran.dat air.dat stratification.dat nnu2.dat particles_initial.dat particles_initial_header.pro .log >& /dev/null

#
  if [ -d "data" ]; then
	if [ "$(basename $0)" == 'cvsci_run_bash' ] ; then
	       $add_cmd data
	fi	
	
	cd data
	$add_cmd $add_data_opt index.pro legend.dat params.log *.nml cvsid.dat varname.dat runtime.dat pc_constants.pro jobid.dat svnid.dat pdim.dat pt_positions.dat tstalk.dat particles_stalker_header.dat >& /dev/null
	if [ -e dim.dat ]; then
		$add_cmd $add_data_opt dim.dat
	fi
	if [ -e time_series.dat ]; then
		$add_cmd $add_data_opt time_series.dat
	fi
	if [ -e time_series.h5 ]; then
		$add_cmd_bin $add_data_opt time_serie
	fi
	if [ -e grid.h5 ]; then
		$add_cmd_bin $add_data_opt grid.h5
	fi

  else
      echo "no data directory found"
  fi
#
#  add alpeta.sav, if it exists
#
if [ -e alpeta.sav ] ; then
	$add_cmd $add_data_opt alpeta.sav
fi
#
#  add power spectra, if they exist
#  (for the time being, test existence only on a few such files)
#
  \ls | egrep 'power.*\.dat' >/dev/null
  if [[ ! $status ]]; then
	  $add_cmd $add_data_opt *power*.dat
  fi
#
#  add structure functions, if they exist
#  (for the time being, test existence only on a few such files)
#
  \ls | egrep 'sf.*\.dat' >/dev/null
  if [[ ! $status ]]; then
	  $add_cmd $add_data_opt sf*.dat
  fi
#
#
  \ls | egrep 'particle_size_dist.dat' >/dev/null
  if [[ ! $status ]]; then
    	$add_cmd $add_data_opt particle_size_dist.dat
  fi
#  
#  add testfield_info.dat file if it exists
#
  if [[ -e testfield_info.dat ]]; then
	  $add_cmd $add_data_opt testfield_info.dat
  fi
#
#  add info about directory history
#
  if [ -f "new_from.dir" ]; then
	  $add_cmd $add_data_opt new_from.dir
  fi
#
  if [ -f "new_to.dir" ]; then
	  $add_cmd $add_data_opt new_to.dir
  fi
#
  if [ -f "remeshed_from.dir" ]; then
	  $add_cmd $add_data_opt remeshed_from.dir
  fi
#
#  check in everything
#  need to take full path name, because we are still in data,
#  which may only be a link.
#
  cd $CWD

  if [ $cvsci ]; then
	 cvs ci -l -m "added new run: `uname -n -s`" . data
#
#  add src stuff only if it is not a link
#  Do this at the very end, in case this step fails.
#
  test -h src
  if [ $? ]; then
	$add_cmd src
    	cd src
	$add_cmd *.local .build-history .moduleinfo
	cd ..
	if [ "$(basename $0)" == 'cvsci_run_bash' ] ; then
		cvs ci -m "added new run: `uname -n -s`" src
	fi
   fi

else
	$add_cmd -h src/*.local src/.build-history >& /dev/null
  fi

  cd ..
done