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\begin{document}
\title{Scientific usage of the {\sc Pencil Code}}
\author{Search results using \url{http://adslabs.org} and \\
Bumblebee \url{https://ui.adsabs.harvard.edu/}}
\date{\small\url{http://pencil-code.nordita.org/highlights/}}
\maketitle

\begin{wrapfigure}{r}{.65\textwidth}\begin{center}
\vspace{-2em}
\includegraphics[width=.65\textwidth]{ptimes}
\vspace{-3em}
\end{center}\caption[]{\small
Number of papers since 2003 that make use of the {\sc Pencil Code}.
In red is shown the number of papers that reference it for code comparison
or other purposes and in blue the papers that are not co-authored
by Brandenburg.
The enhanced number of papers during 2011--2013 results from publications
related to his ERC Advanced Grant.
\vspace{-1em}
}\label{ptimes}\end{wrapfigure}

A search using \url{http://adslabs.org} or Bumblebee \url{https://ui.adsabs.harvard.edu/}
lists the papers in which the {\sc Pencil Code} is being quoted.
In the following we present the papers that are making use of
the code either for their own scientific work of those authors, or
for code comparison purposes.
We include conference proceedings, which make up 15--20\% of all papers.
We classify the references by year and by topic, although the topics are
often overlapping.
The primary application of the {\sc Pencil Code} lies in astrophysics,
in which case we classify mostly by the field of research.

\section{Papers by year}

{\em
As of May 2016, the {\sc Pencil Code} has been used for a total of
416 research papers; see Figure~\ref{ptimes}.
In addition, 58 papers reference it for code comparison or other purposes
(see the red line).
}
%
%18 times in 2016 \citep{
%28 times in 2015 \citep{
%37 times in 2014 \citep{
%46 times in 2013 \citep{
%49 times in 2012 \citep{
%62 times in 2011 \citep{
%31 times in 2010 \citep{
%35 times in 2009 \citep{
%29 times in 2008 \citep{
%19 times in 2007 \citep{
%18 times in 2006 \citep{
%18 times in 2005 \citep{
%20 times in 2004 \citep{
% 7 times in 2003 \citep{
%
\begin{description}
\item
18 times in 2016 \citep{
2016arXiv160502433B,% Bhat, Ebrahimi, Blackman
2016arXiv160209105O,% Osano & Adams
2016arXiv160308523Y,% Yang & Johansen
2016arXiv160105246C,% Cole et al
2016A&A...589A.125W,% Warnecke
2016arXiv160103730W,% Warnecke
2016arXiv160408169L,% Li
2016arXiv160300703M,% Mitra, Haugen, Rogachevskii
2016arXiv160400791L,% Lambrechts
2016A&A...589A..86B,% Bourdin
2016A&A...587A...4T,% Bourdin
2016A&A...587A..90B,% Bhat & Brandenburg "Hydraulic effects in a radiative atmosphere with ionization" 
2016arXiv160401546T,% Tian & Chen
2016SSRv..tmp....5C,% Cameron
2016ApJ...816....2R,% Rodrigues, Sarson, Shukurov
2016ApJ...817..102L,% Lyra, Richert, et al
2016ApJ...816...28K,% Karak
2016PhRvE..93c3125Y% Yokoi & Brandenburg
},\item
28 times in 2015 \citep{
2015arXiv150802706B,% Bhat, Subramanian, Brandenburg
2015ApJ...806..118S,% Singh & Jingade "Numerical studies of dynamo action in a turbulent shear flow - I" 
2015ApJ...805..166J,% Jabbari "Bipolar magnetic spots from dynamos in stratified spherical shell turbulence" 
2015IAUGA..2254998J,% Jabbari
2015NatPh..11..492C,% Chen, Peter, Bingert, Cheung
2015SciA....115109J,% Johansen, Mac Low, ...
2015ApJ...804...95R,% Richert, Lyra, ...
2015arXiv150402940P,% Park & Park
2015arXiv150900788P,% Park
2015arXiv150700510K,% w/ Kahniashvili
2015arXiv151108206A,% Aiyer, Subramanian, Bhat
2015PhRvL.115i5001S,% Smiet, Candelaresi, Thompson. ...
2015A&A...579A..43C,% Carrera, Johansen, Davies
2015MNRAS.453.4232G,% Gibbons, Mamatsashvili, Rice
2015ApJ...814..155B,% Baehr & Klahr
2015AN....336...32S,% Snellman "Testing turbulent closure models with convection simulations" 
2015arXiv150400066R,% Richert "On shocks driven by high-mass planets in radiatively inefficient disks. I. Two-dimensional global disk simulations" 
2015AtmRe.153...49B,% Babkovskaia "A study of aerosol activation at the cloud edge with high resolution numerical simulations" 
2015ApJ...804...35R,% Raettig Klahr & Lyra "Particle Trapping and Streaming Instability in Vortices" 
2015ApJ...811..135A,% Andrievsky "Negative magnetic eddy diffusivities from test-field method and multiscale stability theory" 
2015A&A...579A..43C,% Carrera Johansen & Davies "How to form planetesimals from mm-sized chondrules and chondrule aggregates" 
2015PhRvE..91b1001C,% Chaudhuri "Pair dispersion of turbulent premixed flame elements" 
2015MNRAS.447.3708S,% Singh "Properties of p and f modes in hydromagnetic turbulence" 
2015A&A...574A..10L,% Lyra Turner & McNally "Rossby wave instability does not require sharp resistivity gradients" 
2015A&A...576A..26K,% Karak "Magnetically controlled stellar differential rotation near the transition from solar to anti-solar profiles" 
2015ApJ...803...95K,% Karak Kitchatinov & Brandenburg "Hysteresis between Distinct Modes of Turbulent Dynamos" 
2015AN....336...91B,% Brandenburg & Hubbard "Dynamical quenching with non-local alpha and downward pumping" 
2015PhRvL.114g5001B% Brandenburg Kahniashvili & Tevzadze "Nonhelical Inverse Transfer of a Decaying Turbulent Magnetic Field" 
},\item
37 times in 2014 \citep{
2014ebi..confP2.13C,% Carrera
2014IAUS..299..177Y,% Yang & Johansen
2014CEAB...38....1B,% Bourdin
2014arXiv1412.1940A,% Adams & Osano "Magnetogenesis Experiments Using a Modified Chaplygin Gas EoS" 
2014arXiv1408.0446G,% Gent "Supernovae Driven Turbulence In The Interstellar Medium" 
2014ApJ...792...86Y,% Yang & Johansen "On the Feeding Zone of Planetesimal Formation by the Streaming Instability" 
2014MNRAS.445.2930S,% Subramanian & Brandenburg "Traces of large-scale dynamo action in the kinematic stage" 
2014ApJ...795L...8S,% Singh Brandenburg & Rheinhardt "Fanning Out of the Solar f-mode in the Presence of Non-uniform Magnetic Fields?"
2014AGUFMSH41B4131J,% Jabbari
2014A&A...568A.112J,% Jabbari "Magnetic flux concentrations from dynamo-generated fields" 
2014ApJ...795...16K,% Karak "Quenching and Anisotropy of Hydromagnetic Turbulent Transport" 
2014ApJ...796L..12W,% Warnecke "On The Cause of Solar-like Equatorward Migration in Global Convective Dynamo Simulations" 
2014ApJ...791...62M,% McNally "Temperature Fluctuations Driven by Magnetorotational Instability in Protoplanetary Disks" 
2014A&A...562A..53B,% Brandenburg "Mean-field and direct numerical simulations of magnetic flux concentrations from vertical field" 
2014MNRAS.442..361G,% Gibbons Mamatsashvili & Rice "Planetesimal formation in self-gravitating discs - the effects of particle self-gravity and back-reaction" 
2014ApJ...797..101P,% Pan & Padoan "Turbulence-induced Relative Velocity of Dust Particles. IV. The Collision Kernel" 
2014ApJ...791...48P,% Pan Padoan & Scalo "Turbulence-induced Relative Velocity of Dust Particles. II. The Bidisperse Case"
2014ApJ...792...69P,% Pan Padoan & Scalo "Turbulence-induced Relative Velocity of Dust Particles. III. The Probability Distribution" 
2014ApJ...789...77L,% Lyra "Convective Overstability in Accretion Disks: Three-dimensional Linear Analysis and Nonlinear Saturation" 
2014MNRAS.438.2954B,% Bhat Blackman & Subramanian "Resilience of helical fields to turbulent diffusion - II. Direct numerical simulations"
2014A&A...564A...2L,% Losada "Magnetic flux concentrations in a polytropic atmosphere" 
2014MNRAS.441..116R,% Rheinhardt "Mean-field dynamo action from delayed transport" 
2014MNRAS.445..761M,% Mitra "Intense bipolar structures from stratified helical dynamos"
2014prpl.conf..411T,% Turner "Transport and Accretion in Planet-Forming Disks"
2014IAUS..293..244D,% Dittrich
2014ApJ...786...91B,% Brandenburg & Stepanov "Faraday Signature of Magnetic Helicity from Reduced Depolarization" 
2014ApJ...786...51C,% Chian "Detection of Coherent Structures in Photospheric Turbulent Flows" 
2014ApJ...791...12B,% Brandenburg "Magnetic Prandtl Number Dependence of the Kinetic-to-magnetic Dissipation Ratio"
2014arXiv1403.1328P,% Park
2014MNRAS.444.3837P,% Park "Influence of small-scale E<SUB>M</SUB> and H<SUB>M</SUB> on the growth of large-scale magnetic field" 
2014A&A...570A..43K,% K�pyl� K�pyl� & Brandenburg "Confirmation of bistable stellar differential rotation profiles" 
2014PhPl...21g2126M,% Modestov "Evolution of the magnetic field generated by the Kelvin-Helmholtz instability" 
2014ApJ...780L..22C,% Cole "An Azimuthal Dynamo Wave in Spherical Shell Convection" 
2014PhRvE..89c3009R,% R�diger & Brandenburg "alpha effect in a turbulent liquid-metal plane Couette flow" 
2014IAUS..302..134W,% Warnecke & Brandenburg "Coronal influence on dynamos" 
2014A&A...571A..68B,% Barekat & Brandenburg "Near-polytropic stellar simulations with a radiative surface" 
2014A&A...567A.139V% V�is�l� "Quantifying the effect of turbulent magnetic diffusion on the growth rate of the magneto-rotational instability" 
},\item
46 times in 2013 \citep{
2013Natur.499..184L,% Lyra & Kuchner "Formation of sharp eccentric rings in debris disks with gas but without planets" 
2013yCat..35559123B,% Bourdin Bingert & Peter "VizieR Online Data Catalog: 3D-MHD model of a solar active region corona (Bourdin+, 2013)" 
2013yCat..35550123B,% Bourdin et al
2013A&A...555A.123B,% Bourdin Bingert & Peter "Observationally driven 3D magnetohydrodynamics model of the solar corona above an active region" 
2013sf2a.conf..223F,% F�lix Audit & Dintrans "Towards 3D simulations of Cepheids stars" 
2013oss..prop...80H,% Hubbard NASA proposal
2013PhRvE..87e3110P,% Park
2013MNRAS.434.2020P,% Park "Influence of initial conditions on the large-scale dynamo growth rate" 
2013PhDT.......195P,% Park "Theory and Simulation of Magnetohydrodynamic Dynamos and Faraday Rotation for Plasmas of General Composition" 
2013IAUS..294..359G,% Getling "The flow helicity in quasi-orderedcellular convection" 
2013MNRAS.432.1651D,% Devlen Brandenburg & Mitra "A mean field dynamo from negative eddy diffusivity" 
2013MNRAS.432.1396G,% Gent "The supernova-regulated ISM - I. The multiphase structure" 
2013MNRAS.430L..40G,% Gent "The supernova-regulated ISM - II. The mean magnetic field" 
2013SSRv..178..163B,% Brandenburg & Lazarian "Astrophysical Hydromagnetic Turbulence"
2013ApJ...776...12P,% Pan & Padoan "Turbulence-Induced Relative Velocity of Dust Particles I: Identical Particles" 
2013ApJ...773..120M,% Mitra Wettlaufer & Brandenburg "Can Planetesimals Form by Collisional Fusion?" 
2013A&A...554A..39V,% van Wettum Bingert & Peter "Parameterisation of coronal heating: spatial distribution and observable consequences" 
2013PhRvE..87d3104C,% Candelaresi & Brandenburg "Kinetic helicity needed to drive large-scale dynamos" 
2013IAUS..294..353C,% Candelaresi & Brandenburg "Topological constraints on magnetic field relaxation" 
2013PhRvD..87h3007K,% Kahniashvili "Evolution of primordial magnetic fields from phase transitions" 
2013EPJWC..4604003L,% Lyra "Elliptic and magneto-elliptic instabilities" 
2013MNRAS.429.2469B,% Bhat & Subramanian "Fluctuation dynamos and their Faraday rotation signatures" 
2013ApJ...765..115R,% Raettig Lyra & Klahr "A Parameter Study for Baroclinic Vortex Amplification" 
2013MNRAS.429.1686D,% Del Sordo Guerrero & Brandenburg "Turbulent dynamos with advective magnetic helicity flux" 
2013MNRAS.428.3569C,% Chamandy Subramanian & Shukurov "Galactic spiral patterns and dynamo action - I. A new twist on magnetic arms" 
2013IAUS..290..201D,% Di Bernardo & Torkelsson "Wave modes from the magnetorotational instability in accretion discs" 
2013A&A...556A.106J,% Jabbari "Surface flux concentrations in a spherical alpha<SUP>2</SUP> dynamo" 
2013ApJ...763..117D,% Dittrich Klahr & Johansen "Gravoturbulent Planetesimal Formation: The Positive Effect of Long-lived Zonal Flows" 
2013A&A...550A..30B,% Bingert & Peter "Nanoflare statistics in an active region 3D MHD coronal model" 
2013GApFD.107..207B,% Brandenburg & Rädler "Yoshizawa's cross-helicity effect and its quenching" 
2013SSRv..178..201B,% Bykov "Microphysics of Cosmic Ray Driven Plasma Instabilities" 
2013IAUS..294..387B,% Brandenburg "Non-linear and chaotic dynamo regimes" 
2013IAUS..294..307W,% Warnecke "Solar-like differential rotation and equatorward migration in a convective dynamo with a coronal envelope" 
2013ApJ...778..141W,% Warnecke "Spoke-like Differential Rotation in a Convective Dynamo with a Coronal Envelope" 
2013ApJ...777L..37W,% Warnecke "Bipolar Magnetic Structures Driven by Stratified Turbulence with a Coronal Envelope" 
2013JFM...729..309R,% Rempel "Coherent structures and the saturation of a nonlinear dynamo" 
2013IAUS..294..175M,% Mantere K�pyl� & Pelt "Role of longitudinal activity complexes for solar and stellar dynamos" 
2013SoPh..287..293K,% Kemel "Active Region Formation through the Negative Effective Magnetic Pressure Instability" 
2013PhST..155a4027K,% Kemel "Non-uniformity effects in the negative effective magnetic pressure instability" 
2013A&A...556A..83L,% Losada "Competition of rotation and stratification in flux concentrations" 
2013IAUS..294..283K,% Käpylä "Flux concentrations in turbulent convection" 
2013GApFD.107..244K,% K�pyl� Mantere & Brandenburg "Oscillatory large-scale dynamos from Cartesian convection simulations" 
2013ApJ...778...41K,% K�pyl� "Effects of Enhanced Stratification on Equatorward Dynamo Wave Propagation" 
2013MNRAS.433.2278S,% Svedin Cuellar & Brandenburg "Data assimilation for stratified convection" 
2013ApJ...762..127B,% Brandenburg "New Scaling for the Alpha Effect in Slowly Rotating Turbulence" 
2013ApJ...776L..23B% Brandenburg Kleeorin & Rogachevskii "Self-assembly of shallow magnetic spots through strongly stratified turbulence" 
},\item
49 times in 2012 \citep{
2012sf2a.conf..329F,% F�lix Audit & Dintrans "Pulsations-convection combination in stars" 
2012A&A...548A..49L,% Losada "Rotational effects on the negative magnetic pressure instability" 
2012A&A...548A...1P,% Peter & Bingert "Constant cross section of loops in the solar corona" 
2012A&A...544A..32L,% Lambrechts & Johansen "Rapid growth of gas-giant cores by pebble accretion"
2012PhRvD..86j3005K,% Kahniashvili "Evolution of inflation-generated magnetic field through phase transitions" 
2012ApJ...759...54T,% Tevzadze "Magnetic Fields from QCD Phase Transitions" 
2012MNRAS.426.1444G,% Gibbons Rice & Mamatsashvili "Planetesimal formation in self-gravitating discs" 
2012MNRAS.426.1107L,% Latter & Papaloizou "Hysteresis and thermal limit cycles in MRI simulations of accretion discs" 
2012MNRAS.426..784H,% Hubbard "Turbulence-induced collisional velocities and density enhancements: large inertial range results from shell models" 
2012ApJ...758..103G,% Gaburov Johansen & Levin "Magnetically Levitating Accretion Disks around Supermassive Black Holes" 
2012ApJ...758...48Y,% Yang & Krumholz "Thermal-instability-driven Turbulent Mixing in Galactic Disks. I. Effective Mixing of Metals" 
2012ApJ...756...62L,% Lyra & Mac Low "Rossby Wave Instability at Dead Zone Boundaries in Three-dimensional Resistive Magnetohydrodynamical Global Models of Protoplanetary Disks" 
2012ApJS..201...18M,% McNally Lyra & Passy "A Well-posed Kelvin-Helmholtz Instability Test and Comparison" 
2012ApJS..200....7M,% McNally Maron & Mac Low "Phurbas: An Adaptive, Lagrangian, Meshless, Magnetohydrodynamics Code. II. Implementation and Tests" 
2012PhRvE..86a6313B,% Bonanno "Breakdown of chiral symmetry during saturation of the Tayler instability" 
2012PhFl...24g5106H,% Haugen "Detection of turbulent thermal diffusion of particles in numerical simulations" 
2012MNRAS.419..913P,% Park & Blackman "Comparison between turbulent helical dynamo simulations and a non-linear three-scale theory" 
2012MNRAS.423.2120P,% Park & Blackman "Simulations of a magnetic fluctuation driven large-scale dynamo and comparison with a two-scale model" 
2012ApJ...753...32M,% Mantere & Cole "Dynamo Action in Thermally Unstable Interstellar Flows" 
2012ApJ...753....6R,% Rogachevskii "Cosmic-Ray Current-driven Turbulence and Mean-field Dynamo Effect" 
2012MNRAS.422.2465K,% Käpylä "Negative effective magnetic pressure in turbulent convection" 
2012ApJ...755L..22K,% Käpylä Mantere & Brandenburg "Cyclic Magnetic Activity due to Turbulent Convection in Spherical Wedge Geometry" 
2012ApJS..200....6M,% Maron McNally & Mac Low "Phurbas: An Adaptive, Lagrangian, Meshless, Magnetohydrodynamics Code. I. Algorithm" 
2012ApJ...750...34H,% Horn "Orbital Migration of Interacting Low-mass Planets in Evolutionary Radiative Turbulent Models" 
2012arXiv1204.6322L,% Lyra & Kuchner "Sharp eccentric rings in planetless hydrodynamical models of debris disks" 
2012ApJ...748...79Y,% Yang Mac Low & Menou "Planetesimal and Protoplanet Dynamics in a Turbulent Protoplanetary Disk: Ideal Stratified Disks" 
2012AN....333..230K,% Kitchatinov & Brandenburg "Transport of angular momentum and chemical species by anisotropic mixing in stellar radiative interiors" 
2012AN....333..195B,% Brandenburg & Petrosyan "Kinetic helicity decay in linearly forced turbulence" 
2012ApJ...748...51H,% Hubbard & Brandenburg "Catastrophic Quenching in alphaOmega Dynamos Revisited" 
2012MNRAS.420L...1G,% Guerrero "Plasma flow versus magnetic feature-tracking speeds in the Sun" 
2012MNRAS.420.1640R,% Rice Forgan & Armitage "Convergence of smoothed particle hydrodynamics simulations of self-gravitating accretion discs: sensitivity to the implementation of radiative cooling" 
2012SoPh..280..321K,% Kemel "Spontaneous Formation of Magnetic Flux Concentrations in Stratified Turbulence" 
2012AN....333...95K,% Kemel "Properties of the negative effective magnetic pressure instability" 
2012AN....333...71R,% Rheinhardt & Brandenburg "Modeling spatio-temporal nonlocality in mean-field dynamos" 
2012A&A...537A.152P,% Peter Bingert & Kamio "Catastrophic cooling and cessation of heating in the solar corona" 
2012IAUS..286...37B,% Brandenburg & Guerrero "Cycles and cycle modulations" 
2012ApJ...749..179B,% Brandenburg "The Negative Effective Magnetic Pressure in Stratified Forced Turbulence" 
2012A&A...539A..35B,% Brandenburg R�dler & Kemel "Mean-field transport in stratified and/or rotating turbulence" 
2012A&A...545C...1B,% Brandenburg R�dler & Kemel "Mean-field transport in stratified and/or rotating turbulence (Corrigendum)" 
2012SSRv..169..123B,% Brandenburg Sokoloff & Subramanian "Current Status of Turbulent Dynamo Theory. From Large-Scale to Small-Scale Dynamos" 
2012PhyS...86a8405R,% Rempel C-L Chian & Brandenburg "Lagrangian chaos in an ABC-forced nonlinear dynamo" 
2012IAUS..286...65D,% Del Sordo "Spontaneous chiral symmetry breaking in the Tayler instability" 
2012IAUS..286...49C,% Candelaresi & Brandenburg "Magnetic helicity fluxes and their effect on stellar dynamos" 
2012AN....333...78S,% Snellman "Verification of Reynolds stress parameterizations from simulations" 
2012PhyS...86a8406S,% Snellman "Mean-field closure parameters for passive scalar turbulence" 
2012JSWSC...2A..11W,% Warnecke "Magnetic twist: a source and property of space weather" 
2012IAUS..286..154W,% Warnecke "Coronal ejections from convective spherical shell dynamos" 
2012SoPh..280..299W,% Warnecke "Ejections of Magnetic Structures Above a Spherical Wedge Driven by a Convective Dynamo with Differential Rotation" 
2012A&A...537A.125J% Johansen Youdin & Lithwick "Adding particle collisions to the formation of asteroids and Kuiper belt objects via streaming instabilities" 
},\item
62 times in 2011 \citep{
2011A&A...530L...7G,% Gastine & Dintrans "A test of time-dependent theories of stellar convection" 
2011A&A...528A...6G,% Gastine & Dintrans "Convective quenching of stellar pulsations" 
2011sf2a.conf..215G,% Gastine & Dintrans "Nonlinear simulations of the convection-pulsation coupling" 
2011MNRAS.418.1356R,% Rice "Stability of self-gravitating discs under irradiation" 
2011AN....332..883K,% Käpylä Mantere & Brandenburg "Effects of stratification in spherical shell convection" 
2011A&A...531A.162K,% Käpylä "Reynolds stress and heat flux in spherical shell convection" 
2011ApJ...742...34K,% Käpylä Mantere & Hackman "Starspots due to Large-scale Vortices in Rotating Turbulent Convection" 
2011AN....332..876M,% Mantere Käpylä & Hackman "Dependence of the large-scale vortex instability on latitude, stratification, and domain size" 
2011PhRvE..84e6314R,% Rogachevskii "Pumping velocity in homogeneous helical turbulence with shear" 
2011ESS.....2.3302L,% Michiel Lambrechts
2011IAUS..274...50J,% Johansen et al
2011IAUS..276...89J,% Johansen
2011PhRvE..84d6321R,% Rädler "Mean-field diffusivities in passive scalar and magnetic transport in irrotational flows" 
2011arXiv1110.1163T,% Tarjei Jensen Haugen & Babkovskaia "Calculation of the Minimum Ignition Energy based on the ignition delay time"
2011ApJ...740...18O,% Oishi \& Mac Low "Magnetorotational Turbulence Transports Angular Momentum in Stratified Disks with Low Magnetic Prandtl Number but Magnetic Reynolds Number above a Critical Value" 
2011A&A...534A.122R,% Ruoskanen "Mapping the prestellar core Ophiuchus D (L1696A) in ammonia" 
2011A&A...534A.107F,% Fromang Lyra & Masset "Meridional circulation in turbulent protoplanetary disks" 
2011arXiv1109.1135H,% Hydle Rivedal Granskogen Bjørnstad & Haugen "The effect of turbulence on the particle impaction on a cylinder in a cross flow" 
2011A&A...533A..40G,% Guerrero & Käpylä "Dynamo action and magnetic buoyancy in convection simulations with vertical shear" 
2011IAUS..271..407W,% Warnecke & Brandenburg "Recurrent flux emergence from dynamo-generated fields" 
2011A&A...534A..11W,% Warnecke Brandenburg & Mitra "Dynamo-driven plasmoid ejections above a spherical surface" 
2011IAUS..274..306W,% Warnecke Brandenburg & Mitra "Plasmoid ejections driven by dynamo action underneath a spherical surface" 
2011PhRvE..84e6407K,% Kemel Brandenburg & Ji "Model of driven and decaying magnetic turbulence in a cylinder" 
2011IAUS..273...83K,% Kemel "The negative magnetic pressure effect in stratified turbulence" 
2011IAUS..274..473K,% Kemel "Turbulent magnetic pressure instability in stratified turbulence" 
2011ApJ...737...62B,% Bejarano Gómez & Brandenburg "Shear-driven Instabilities in Hall-magnetohydrodynamic Plasmas" 
2011A&A...532A.112Z,% Zacharias Peter & Bingert "Ejection of cool plasma into the hot corona" 
2011A&A...531A..97Z,% Zacharias Peter & Bingert "Investigation of mass flows in the transition region and corona in a three-dimensional numerical model approach" 
2011PhRvE..84a6406C,% Candelaresi & Brandenburg "Decay of helical and nonhelical magnetic knots" 
2011IAUS..274..464C,% Candelaresi & Brandenburg "Magnetic helicity fluxes in alphaOmega dynamos" 
2011IAUS..274..461C,% Candelaresi Del Sordo & Brandenburg "Decay of trefoil and other magnetic knots" 
2011PhPl...18a2903C,% Candelaresi "Magnetic helicity transport in the advective gauge family" 
2011IAUS..271..369C,% Candelaresi Sordo & Brandenburg "Influence of Magnetic Helicity in MHD" 
2011IAUS..274..373S,% Sordo & Brandenburg "How can vorticity be produced in irrotationally forced flows?" 
2011A&A...528A.145D,% Del Sordo & Brandenburg "Vorticity production through rotation, shear, and baroclinicity" 
2011IAUS..272...32C,% Cantiello "3D MHD simulations of subsurface convection in OB stars" 
2011IAUS..273..200C,% Cantiello "Turbulence and magnetic spots at the surface of hot massive stars" 
2011ApJ...735L...9R,% Rempel Chian & Brandenburg "Lagrangian Coherent Structures in Nonlinear Dynamos" 
2011ApJ...735..122F,% Flock "Turbulence and Steady Flows in Three-dimensional Global Stratified Magnetohydrodynamic Simulations of Accretion Disks" 
2011A&A...530A.112B,% Bingert & Peter "Intermittent heating in the solar corona employing a 3D MHD model" 
2011MNRAS.413..901K,% Käpylä & Korpi "Magnetorotational instability driven dynamos at low magnetic Prandtl numbers" 
2011A&A...529A..62J,% Johansen Klahr & Henning "High-resolution simulations of planetesimal formation in turbulent protoplanetary discs" 
2011SoPh..269....3R,% Rüdiger Kitchatinov & Brandenburg "Cross Helicity and Turbulent Magnetic Diffusivity in the Solar Convection Zone" 
2011A&A...527A.138L,% Lyra & Klahr "The baroclinic instability in the context of layered accretion. Self-sustained vortices and their magnetic stability in local compressible unstratified models of protoplanetary disks" 
2011A&A...526A.138M,% Mitra "Alleviating alpha quenching by solar wind and meridional flows" 
2011JCoPh.230....1B,% Babkovskaia Haugen & Brandenburg "A high-order public domain code for direct numerical simulations of turbulent combustion" 
2011ApJ...727...11H,% Hubbard & Brandenburg "Magnetic Helicity Flux in the Presence of Shear" 
2011A&A...525A...5C,% Chatterjee Guerrero & Brandenburg "Magnetic helicity fluxes in interface and flux transport dynamos" 
2011PhRvE..84b5403C,% Chatterjee "Spontaneous chiral symmetry breaking by hydromagnetic buoyancy" 
2011A&A...534A..46C,% Chatterjee "Alpha effect due to buoyancy instability of a magnetic layer" 
2011ASInC...2..137C,% Chatterjee "Alpha effect due to magnetic buoyancy instability of a horizontal magnetic layer" 
2011A&A...535A..48H,% Hubbard Rheinhardt & Brandenburg "The fratricide of alphaOmega dynamos by their alpha<SUP>2</SUP> siblings" 
2011AGUFMSH54A..03G,% Guerrero "Theoretical comparison of plasma and magnetic feature tracking (MFT) flows: a perspective for assimilating meridional flow data in flux-transport models" 
2011RPPh...74d6901B,% Brandenburg & Nordlund "Astrophysical turbulence modeling"
2011IAUS..273..256W,% Warnecke & Brandenburg "Dynamo generated field emergence through recurrent plasmoid ejections" 
2011PhRvE..83a6304B,% Brandenburg Haugen & Babkovskaia "Turbulent front speed in the Fisher equation: Dependence on Damköhler number" 
2011IAUS..271..279B,% Brandenburg K�pyl� & Korpi "From convective to stellar dynamos" 
2011ApJ...740L..50B,% Brandenburg "Detection of Negative Effective Magnetic Pressure Instability in Turbulence Simulations" 
2011Prama..77...67B,% Brandenburg "Chandrasekhar-Kendall functions in astrophysical dynamos" 
2011AN....332...51B,% Brandenburg "Dissipation in dynamos at low and high magnetic Prandtl numbers" 
2011ApJ...741...92B,% Brandenburg "Nonlinear Small-scale Dynamos at Low Magnetic Prandtl Numbers" 
2011IAUS..274..402B% Brandenburg "Simulations of astrophysical dynamos" 
},\item
31 times in 2010 \citep{
2010arXiv1008.5040H,% Haugen "Particle impaction efficiency and size distribution in a MSWI super heater tube bundle" 
2010PhRvE..82a6304M,% Madarassy & Brandenburg "Calibrating passive scalar transport in shear-flow turbulence" 
2010Ap&SS.328..245G,% Gastine & Dintrans "Numerical simulations of the kappa-mechanism with convection" 
2010PhRvD..81l3002K,% Kahniashvili "Numerical simulations of the decay of primordial magnetic turbulence" 
2010ApJ...715L..68L,% Lyra Paardekooper & Mac Low "Orbital Migration of Low-mass Planets in Evolutionary Radiative Models: Avoiding Catastrophic Infall" 
2010MNRAS.404..475J,% Johansen & Lacerda "Prograde rotation of protoplanets by accretion of pebbles in a gaseous environment" 
2010PhRvE..81c6401D,% Del Sordo Candelaresi & Brandenburg "Magnetic-field decay of three interlocked flux rings with zero linking number" 
2010EAS....41..167F,% Fromang "MHD turbulence in accretion disks: the importance of the magnetic Prandtl number" 
2010AN....331..130M,% Mitra "Equatorial magnetic helicity flux in simulations with different gauges" 
2010IAUS..264..197M,% Mitra "Oscillatory migratory large-scale fields in mean-field and direct simulations" 
2010ApJ...719L...1M,% Mitra "Oscillatory Migrating Magnetic Fields in Helical Turbulence in Spherical Domains" 
2010AN....331...34K,% Korpi Käpylä & Väisälä "Influence of Ohmic diffusion on the excitation and dynamics of MRI" 
2010ApJ...719...67K,% Käpylä "Angular Momentum Transport in Convectively Unstable Shear Flows" 
2010A&A...518A..22K,% Käpylä Korpi & Brandenburg "Open and closed boundaries in large-scale convective dynamos" 
2010MNRAS.402.1458K,% K�pyl� Korpi & Brandenburg "The alpha effect in rotating convection with sinusoidal shear" 
2010AN....331...73K,% Käpylä "Convective dynamos in spherical wedge geometry" 
2010AN....331...46B,% Baggaley "Fluctuation dynamo based on magnetic reconnections" 
2010ascl.soft10060B,% Brandenburg & Dobler "Pencil Code: Finite-difference Code for Compressible Hydrodynamic Flows" 
2010MNRAS.409.1619G,% Guerrero Chatterjee & Brandenburg "Shear-driven and diffusive helicity fluxes in alphaOmega dynamos" 
2010GApFD.104..591C,% Chatterjee Brandenburg & Guerrero "Can catastrophic quenching be alleviated by separating shear and alpha effect?" 
2010AN....331...14R,% R�dler & Brandenburg "Mean electromotive force proportional to mean flow in MHD turbulence" 
2010AdSpR..45..310B,% Bingert "On the nature of coronal loops above the quiet sun network" 
2010A&A...523A..19W,% Warnecke & Brandenburg "Surface appearance of dynamo-generated large-scale fields" 
2010GApFD.104..577H,% Hubbard & Brandenburg "Magnetic helicity fluxes in an alpha2 dynamo embedded in a halo" 
2010A&A...520A..28R,% Rheinhardt & Brandenburg "Test-field method for mean-field coefficients with MHD background" 
2010HiA....15..432B,% Brandenburg & Del Sordo "Turbulent diffusion and galactic magnetism" 
2010PhST..142a4028B,% Brandenburg "Turbulent transport in hydromagnetic flows" 
2010AN....331....5B,% Brandenburg Kleeorin & Rogachevskii "Large-scale magnetic flux concentrations from turbulent stresses" 
2010MNRAS.401..347B,% Brandenburg "Magnetic field evolution in simulations with Euler potentials" 
2010cosp...38.2826B% Brandenburg "Surface appearance of dynamo-generated large-scale fields" 
},\item
35 times in 2009 \citep{
2009ApJ...707.1233Y,% Yang Mac Low & Menou "Planetesimal and Protoplanet Dynamics in a Turbulent Protoplanetary Disk: Ideal Unstratified Disks" 
2009PhRvE..80e5301B,% Baggaley "Reconnecting flux-rope dynamo" 
2009MNRAS.400..509R,% Rempel Proctor & Chian "A novel type of intermittency in a non-linear dynamo in a compressible flow" 
2009ApJ...704.1239O,% Oishi & Mac Low "On Hydrodynamic Motions in Dead Zones" 
2009A&A...505..955S,% Snellman "Reynolds stresses from hydrodynamic turbulence with shear and rotation" 
2009ApJ...701.1269B,% Børve Speith & Trulsen "Numerical Dissipation in RSPH Simulations of Astrophysical Flows with Application to Protoplanetary Disks" 
2009AN....330..797V,% Vermersch & Brandenburg "Shear-driven magnetic buoyancy oscillations" 
2009MNRAS.397...64H,% Heinemann & Papaloizou "The excitation of spiral density waves through turbulent fluctuations in accretion discs - II. Numerical simulations with MRI-driven turbulence" 
2009ApJ...699.1059K,% Käpylä & Brandenburg "Turbulent Dynamos with Shear and Fractional Helicity" 
2009ApJ...697.1269J,% Johansen Youdin & Klahr "Zonal Flows and Long-lived Axisymmetric Pressure Bumps in Magnetorotational Turbulence" 
2009ApJ...704L..75J,% Johansen Youdin & Mac Low "Particle Clumping and Planetesimal Formation Depend Strongly on Metallicity"
2009ApJS..182..468M,% Maron & Mac Low "Tuned Finite-Difference Diffusion Operators" 
2009MmSAI..80..654Z,% Zacharias Bingert & Peter "Doppler shifts in the transition region and corona. Mass cycle between the chromosphere and the corona" 
2009AdSpR..43.1451Z,% Zacharias Bingert & Peter "Spectral analysis of 3D MHD models of coronal structures" 
2009ASPC..406....9F,% Fromang "Numerical Simulations of MHD Turbulence in Accretion Disks" 
2009A&A...495....1M,% Mitra "Alpha effect and diffusivity in helical turbulence with shear" 
2009ApJ...697..923M,% Mitra "Turbulent Dynamos in Spherical Shell Segments of Varying Geometrical Extent" 
2009A&A...500..633K,% Käpylä Korpi & Brandenburg "Alpha effect and turbulent diffusion from convection" 
2009ApJ...697.1153K,% Käpylä Korpi & Brandenburg "Large-scale Dynamos in Rigidly Rotating Turbulent Convection" 
2009PhRvE..79a6302K,% Käpylä Mitra & Brandenburg "Numerical study of large-scale vorticity generation in shear-flow turbulence" 
2009AN....330...92L,% Liljeström "Turbulent stresses as a function of shear rate in a local disk model" 
2009A&A...493.1125L,% Lyra "Standing on the shoulders of giants. Trojan Earths and vortex trapping in low mass self-gravitating protoplanetary disks of gas and solids" 
2009A&A...497..869L,% Lyra "Planet formation bursts at the borders of the dead zone in 2D numerical simulations of circumstellar disks" 
2009ApJ...706..712H,% Hubbard & Brandenburg "Memory Effects in Turbulent Transport" 
2009MNRAS.399..273S,% Sur & Brandenburg "The role of the Yoshizawa effect in the Archontis dynamo" 
2009MNRAS.398.1891H,% Hubbard "The alpha effect with imposed and dynamo-generated magnetic fields" 
2009MNRAS.393..113R,% R�dler & Brandenburg "Mean-field effects in the Galloway-Proctor flow" 
2009MNRAS.398.1414B,% Brandenburg Candelaresi & Chatterjee "Small-scale magnetic helicity losses from a mean-field dynamo" 
2009MNRAS.395.1599B,% Brandenburg Svedin & Vasil "Turbulent diffusion with rotation or magnetic fields" 
2009SSRv..144...87B,% Brandenburg "Advances in Theory and Simulations of Large-Scale Dynamos" 
2009odsm.book...87B,% Brandenburg "Advances in Theory and Simulations of Large-Scale Dynamos" 
2009ASPC..416..433B,% Brandenburg "From Fibril to Diffuse Fields During Dynamo Saturation" 
2009ApJ...697.1206B,% Brandenburg "Large-scale Dynamos at Low Magnetic Prandtl Numbers" 
2009IAUS..259..159B,% Brandenburg "Paradigm shifts in solar dynamo modeling" 
2009PPCF...51l4043B% Brandenburg "The critical role of magnetic helicity in astrophysical large-scale dynamos" 
},\item
28 times in 2008 \citep{
2008A&A...491L..41L,% Lyra "Embryos grown in the dead zone. Assembling the first protoplanetary cores in low mass self-gravitating circumstellar disks of gas and solids" 
2008A&A...479..883L,% Lyra "Global magnetohydrodynamical models of turbulence in protoplanetary disks. I. A cylindrical potential on a Cartesian grid and transport of solids" 
2008A&A...484...29G,% Gastine & Dintrans "Direct numerical simulations of the kappa-mechanism. I. Radial modes in the purely radiative case" 
2008A&A...490..743G,% Gastine & Dintrans "Direct numerical simulations of the kappa-mechanism. II. Nonlinear saturation and the Hertzsprung progression" 
2008arXiv0809.4949G, % Gastine & Dintrans, conf proc
2008A&A...490..501J,% Johansen & Levin "High accretion rates in magnetised Keplerian discs mediated by a Parker instability driven dynamo" 
2008ApJ...685..406W,% Workman & Armitage "Interaction of the Magnetorotational Instability with Hydrodynamic Turbulence in Accretion Disks" 
2008A&A...488....9K,% Käpylä & Brandenburg "Lambda effect from forced turbulence simulations" 
2008NewAR..52...78K,% Klahr
2008CRPhy...9..757R,% Rieutord
2008A&A...486..597J,% Johansen "A coagulation-fragmentation model for the turbulent growth and destruction of preplanetesimals" 
2008PhRvL.100r4501Y,% Yousef "Generation of Magnetic Field by Combined Action of Turbulence and Shear" 
2008MNRAS.386.1038B,% Babkovskaia Brandenburg & Poutanen "Boundary layer on the surface of a neutron star" 
2008ApJ...677L.149S,% Scharmer Nordlund & Heinemann "Convection and the Origin of Evershed Flows in Sunspot Penumbrae" 
2008ApJ...677..520M,% Maron Mac Low & Oishi "A Constrained-Transport Magnetohydrodynamics Algorithm with Near-Spectral Resolution" 
2008MNRAS.383.1359R,% Ruszkowski "Cosmic ray confinement in fossil cluster bubbles" 
2008A&A...479L..33G,% Gellert Rüdiger & Elstner "Helicity generation and alpha-effect by Tayler instability with z-dependent differential rotation" 
2008PhRvE..77b6405R,% R�dler & Brandenburg "alpha -effect dynamos with zero kinetic helicity" 
2008MNRAS.391.1477T,% Tilgner & Brandenburg "A growing dynamo from a saturated Roberts flow dynamo" 
2008MNRAS.385L..15S,% Sur Brandenburg & Subramanian "Kinematic alpha-effect in isotropic turbulence simulations" 
2008A&A...491..353K,% K�pyl� Korpi & Brandenburg "Large-scale dynamos in turbulent convection with shear" 
2008ASPC..398..219Y,% Youdin & Johansen "Planetesimal Formation with Particle Feedback"
2008AGUSMSP21A..04G,% Green et al, American Geophysical Union, Spring Meeting
2008ApJ...676..740B,% Brandenburg "Magnetic Diffusivity Tensor and Dynamo Effects in Rotating and Shearing Turbulence" 
2008ApJ...687L..49B,% Brandenburg "Magnetic Quenching of alpha and Diffusivity Tensors in Helical Turbulence" 
2008A&A...482..739B,% Brandenburg R�dler & Schrinner "Scale dependence of alpha effect and turbulent diffusivity" 
2008AN....329..725B,% Brandenburg "The dual role of shear in large-scale dynamos" 
2008PhST..130a4016B% Brandenburg "Turbulent protostellar discs" 
},\item
19 times in 2007 \citep{
2007AN....328.1006K,% Käpylä & Brandenburg "Turbulent viscosity and Lambda-effect from numerical turbulence models" 
2007A&A...476.1123F,% Fromang "MHD simulations of the magnetorotational instability in a shearing box with zero net flux. II. The effect of transport coefficients" 
2007A&A...476.1113F,% Fromang & Papaloizou "MHD simulations of the magnetorotational instability in a shearing box with zero net flux. I. The issue of convergence" 
2007ApJ...670..805O,% Oishi Mac Low & Menou "Turbulent Torques on Protoplanets in a Dead Zone" 
2007ApJ...669.1390H,% Heinemann "MHD Simulations of Penumbra Fine Structure" 
2007NJPh....9..305B,% Brandenburg & Käpylä "Magnetic helicity effects in astrophysical and laboratory dynamos" 
2007NJPh....9..300S,% Schekochihin "Fluctuation dynamo and turbulent induction at low magnetic Prandtl numbers" 
2007IAUS..237..183G,% Gustafsson "Probing turbulence in OMC1 at the star forming scale: observations and simulations" 
2007MNRAS.378..662R,% Ruszkowski "Impact of tangled magnetic fields on fossil radio bubbles" 
2007ApJ...662..627J,% Johansen & Youdin "Protoplanetary Disk Turbulence Driven by the Streaming Instability: Nonlinear Saturation and Particle Concentration" 
2007ApJ...662..613Y,% Youdin & Johansen "Protoplanetary Disk Turbulence Driven by the Streaming Instability: Linear Evolution and Numerical Methods" 
2007Natur.448.1022J,% Johansen "Rapid planetesimal formation in turbulent circumstellar discs" 
2007arXiv0708.3893J,% Johansen "Supplementary Information for ``Rapid planetesimal formation in turbulent circumstellar discs''" 
2007MNRAS.376.1238S,% Sur Subramanian & Brandenburg "Kinetic and magnetic alpha-effects in non-linear dynamo theory" 
2007AN....328..507B,% Brandenburg & Subramanian "Simulations of the anisotropic kinetic and magnetic alpha effects" 
2007AN....328.1118B,% Brandenburg "The helicity constraint in spherical shell dynamos" 
2007ApJ...654..945B,% Brandenburg Korpi & Mee "Thermal Instability in Shearing and Periodic Turbulence" 
2007IAUS..239..457B,% Brandenburg "Near-surface shear layer dynamics" 
2007HiA....14..291B% Brandenburg "Why coronal mass ejections are necessary for the dynamo" 
},\item
18 times in 2006 \citep{
2006ApJ...653..558O,% Ouyed "Three-Dimensional Simulations of the Reorganization of a Quark Star's Magnetic Field as Induced by the Meissner Effect" 
2006A&A...459..935H,% Hupfer Käpylä & Stix "Reynolds stresses and meridional circulation from rotating cylinder simulations" 
2006A&A...457..371F,% Fromang Hennebelle & Teyssier "A high order Godunov scheme with constrained transport and adaptive mesh refinement for astrophysical magnetohydrodynamics" 
2006MNRAS.370..529D,% de Val-Borro "A comparative study of disc-planet interaction" 
2006PhFl...18g5106H,% Haugen & Brandenburg "Hydrodynamic and hydromagnetic energy spectra from large eddy simulations" 
2006ApJ...643.1219J,% Johansen Henning & Klahr "Dust Sedimentation and Self-sustained Kelvin-Helmholtz Turbulence in Protoplanetary Disk Midplanes" 
2006ApJ...636.1121J,% Johansen Klahr & Henning "Gravoturbulent Formation of Planetesimals" 
2006MNRAS.370L..71J,% Johansen Klahr & Mee "Turbulent diffusion in protoplanetary discs: the effect of an imposed magnetic field" 
2006A&A...448L..33S,% Shukurov "Galactic dynamo and helicity losses through fountain flow" 
2006MNRAS.370..415M,% Mee & Brandenburg "Turbulence from localized random expansion waves" 
2006MNRAS.373..643S,% Snodin "Simulating field-aligned diffusion of a cosmic ray gas" 
2006A&A...450..437B,% Brandenburg & Dintrans "Nonaxisymmetric stability in the shearing sheet approximation" 
2006A&A...454..815G,% Gustafsson "The nature of turbulence in OMC1 at the scale of star formation: observations and simulations" 
2006A&A...448..731H,% Heinemann "Radiative transfer in decomposed domains" 
2006ApJ...638..336D,% Dobler Stix & Brandenburg "Magnetic Field Generation in Fully Convective Rotating Spheres" 
2006ASPC..354..121B,% Brandenburg "Location of the Solar Dynamo and Near-Surface Shear" 
2006AN....327..461B,% Brandenburg "Magnetic helicity in primordial and dynamo scenarios of galaxies" 
2006IAUJD...8E..62B% Brandenburg "Why coronal mass ejections are necessary for the dynamo" 
},\item
18 times in 2005 \citep{
2005ApJ...634.1353J,% Johansen & Klahr "Dust Diffusion in Protoplanetary Disks by Magnetorotational Turbulence" 
2005PEPI..153..124M,% McMillan & Sarson "Dynamo simulations in a spherical shell of ideal gas using a high-order cartesian magnetohydrodynamics code" 
2005ApJ...625L.115S,% Schekochihin "The Onset of a Small-Scale Turbulent Dynamo at Low Magnetic Prandtl Numbers" 
2005ESASP.560..511D,% Dorch "Dynamo action in late-type giants" 
2005prpl.conf.8004J,% Johansen Klahr & Henning "Gravoturbulent Formation of Planetesimals" 
2005AN....326..393C,% Christensson Hindmarsh & Brandenburg }% "Scaling laws in decaying helical hydromagnetic turbulence" 
2005astro.ph.12409B,% Brandenburg & Ruediger "The angular momentum transport by the strato-rotational instability in simulated Taylor-Couette flows" 
2005HiA....13..101B,% Brandenburg & Blackman "Ejection of Bi-Helical Fields from the Sun" 
2005astro.ph.12639B,% Brandenburg & K�pyl� "Connection between active longitudes and magnetic helicity" 
2005PhR...417....1B,% Brandenburg & Subramanian "Astrophysical magnetic fields and nonlinear dynamo theory" 
2005A&A...439..835B,% Brandenburg & Subramanian "Minimal tau approximation and simulations of the alpha effect" 
2005AN....326..400B,% Brandenburg & Subramanian "Strong mean field dynamos require supercritical helicity fluxes" 
2005mpge.conf..139B,% Brandenburg Haugen & Mee "Nonhelical turbulent dynamos: shocks and shear" 
2005AN....326..174B,% Brandenburg "The problem of small and large scale fields in the solar dynamo" 
2005astro.ph.12638B,% Brandenburg "Distributed versus tachocline dynamos" 
2004physics...4118B,% Brandenburg K�pyl� & Mohammed "Passive scalar diffusion as a damped wave" 
2005LNP...664..219B,% Brandenburg "Importance of Magnetic Helicity in Dynamos" 
2005ApJ...625..539B,% Brandenburg "The Case for a Distributed Solar Dynamo Shaped by Near-Surface Shear" 
2005AN....326..787B% Brandenburg "Turbulence and its parameterization in accretion discs" 
},\item
20 times in 2004 \citep{
2004ASPC..325..165N,% Nordlund "Magnetohydrodynamics of the Solar Atmosphere" 
2004A&A...427...13B,% Brandenburg & Sandin "Catastrophic alpha quenching alleviated by helicity flux and shear" 
2004IJAsB...3..209B,% Brandenburg & Multamaki
2004IAUS..219..656D,% Dorch "A Magnetic Betelgeuse? Numerical Simulations of Non-Linear Dynamo Action" 
2004A&A...423.1101D,% Dorch "Magnetic activity in late-type giant stars: Numerical MHD simulations of non-linear dynamo action in Betelgeuse" 
2004PhRvE..70b6405H,% Haugen & Brandenburg "Inertial range scaling in numerical turbulence with hyperviscosity" 
2004PhRvE..70c6408H,% Haugen & Brandenburg "Suppression of small scale dynamo action by an imposed magnetic field" 
2004PhRvE..70a6308H,% Haugen Brandenburg & Dobler "Simulations of nonhelical hydromagnetic turbulence" 
2004Ap&SS.292...53H,% Haugen Brandenburg & Dobler "High-Resolution Simulations of Nonhelical MHD Turbulence" 
2004MNRAS.353..947H,% Haugen Brandenburg & Mee "Mach number dependence of the onset of dynamo action" 
2004PhRvE..69e6303Y,% Yousef Haugen & Brandenburg "Self-similar scaling in decaying numerical turbulence" 
2004A&A...417..361J,% Johansen Andersen & Brandenburg "Simulations of dust-trapping vortices in protoplanetary discs" 
2004DDA....35.0407M,% Maron "New Algorithms for Magnetohydrodynamics and Gravity that Emphasize Resolution and Speed." 
2004PhRvE..70e6301P,% Pearson "Delayed correlation between turbulent energy injection and dissipation" 
2004PhRvE..69e6407B,% Brandenburg & Matthaeus "Magnetic helicity evolution in a periodic domain with imposed field" 
2004IAUS..223..239D,% Dobler & Getling "Compressible magnetoconvection as the local producer of solar-type magnetic structures" 
2004AIPC..733..122B,% Brandenburg Dintrans & Haugen "Shearing and embedding box simulations of the magnetorotational instability" 
2004PhFl...16.1020B,% Brandenburg Käpylä & Mohammed "Non-Fickian diffusion and tau approximation from numerical turbulence" 
2004IAUS..223...57B% Brandenburg Sandin & K�pyl� "Helical coronal ejections and their role in the solar cycle" 
},\item
and 7 times in 2003 \citep{
2003A&A...411..321Y,% Yousef Brandenburg & Rüdiger "Turbulent magnetic Prandtl number and magnetic diffusivity quenching from simulations" 
2003A&A...407....7Y,% Yousef & Brandenburg "Relaxation of writhe and twist of a bi-helical magnetic field" 
2003AGUFMGP11C0280M,% McMillan
2003ApJ...597L.141H,% Haugen Brandenburg & Dobler "Is Nonhelical Hydromagnetic Turbulence Peaked at Small Scales?" 
2003eclm.book..269B,% Brandenburg "Computational aspects of astrophysical MHD and turbulence" 
2003astro.ph..3371B,% Brandenburg Haugen & Dobler "MHD simulations of small and large scale dynamos" 
2003PhRvE..68b6304D% Dobler "Bottleneck effect in three-dimensional turbulence simulations" 
}.
\end{description}

%t o p i c
\section{Papers by topic}

The {\sc Pencil Code} has been used for the following research topics
\begin{enumerate}

\item
{\bf Interstellar and intercluster medium as well as early Universe}

\begin{enumerate}
\item
{\em Interstellar and intercluster medium} \citep{
2016ApJ...816....2R,% Rodrigues, Sarson, Shukurov
2014arXiv1408.0446G,% Gent "Supernovae Driven Turbulence In The Interstellar Medium" 
2013MNRAS.428.3569C,% Chamandy Subramanian & Shukurov "Galactic spiral patterns and dynamo action - I. A new twist on magnetic arms" 
2013MNRAS.432.1396G,% Gent "The supernova-regulated ISM - I. The multiphase structure" 
2013MNRAS.430L..40G,% Gent "The supernova-regulated ISM - II. The mean magnetic field" 
2013SSRv..178..201B,% Bykov "Microphysics of Cosmic Ray Driven Plasma Instabilities" 
2012ApJ...758...48Y,% Yang & Krumholz "Thermal-instability-driven Turbulent Mixing in Galactic Disks. I. Effective Mixing of Metals" 
2012ApJ...753...32M,% Mantere & Cole "Dynamo Action in Thermally Unstable Interstellar Flows" 
2012ApJ...753....6R,% Rogachevskii "Cosmic-Ray Current-driven Turbulence and Mean-field Dynamo Effect" 
2011A&A...534A.122R,% Ruoskanen "Mapping the prestellar core Ophiuchus D (L1696A) in ammonia" 
2007MNRAS.378..662R,% Ruszkowski "Impact of tangled magnetic fields on fossil radio bubbles" 
2008MNRAS.383.1359R,% Ruszkowski "Cosmic ray confinement in fossil cluster bubbles" 
2007ApJ...654..945B,% Brandenburg Korpi & Mee "Thermal Instability in Shearing and Periodic Turbulence" 
2006A&A...454..815G,% Gustafsson "The nature of turbulence in OMC1 at the scale of star formation: observations and simulations" 
2007IAUS..237..183G,% Gustafsson "Probing turbulence in OMC1 at the star forming scale: observations and simulations" 
2005mpge.conf..139B,% Brandenburg Haugen & Mee "Nonhelical turbulent dynamos: shocks and shear" 
2004Ap&SS.292...53H,% Haugen Brandenburg & Dobler "High-Resolution Simulations of Nonhelical MHD Turbulence" 
2003astro.ph..3371B% Brandenburg Haugen & Dobler "MHD simulations of small and large scale dynamos" 
}.

\item
{\em Small-scale dynamos and reconnection} \citep{
2015arXiv150802706B,% Bhat, Subramanian, Brandenburg
2013MNRAS.429.2469B,% Bhat & Subramanian "Fluctuation dynamos and their Faraday rotation signatures" 
2011ApJ...741...92B,% Brandenburg "Nonlinear Small-scale Dynamos at Low Magnetic Prandtl Numbers" 
2009PhRvE..80e5301B,% Baggaley "Reconnecting flux-rope dynamo" 
2010AN....331...46B,% Baggaley "Fluctuation dynamo based on magnetic reconnections" 
2005ApJ...625L.115S,% Schekochihin "The Onset of a Small-Scale Turbulent Dynamo at Low Magnetic Prandtl Numbers" 
2007NJPh....9..300S,% Schekochihin "Fluctuation dynamo and turbulent induction at low magnetic Prandtl numbers" 
2004PhRvE..70c6408H,% Haugen & Brandenburg "Suppression of small scale dynamo action by an imposed magnetic field" 
2003ApJ...597L.141H,% Haugen Brandenburg & Dobler "Is Nonhelical Hydromagnetic Turbulence Peaked at Small Scales?" 
2004PhRvE..70a6308H,% Haugen Brandenburg & Dobler "Simulations of nonhelical hydromagnetic turbulence" 
2004MNRAS.353..947H,% Haugen Brandenburg & Mee "Mach number dependence of the onset of dynamo action" 
2003PhRvE..68b6304D% Dobler "Bottleneck effect in three-dimensional turbulence simulations" 
}.

\item %p r i
{\em Primordial magnetic fields and decaying turbulence} \citep{
2016arXiv160209105O,% Osano & Adams
2015arXiv150700510K,% w/ Kahniashvili
2015PhRvL.114g5001B,% Brandenburg Kahniashvili & Tevzadze "Nonhelical Inverse Transfer of a Decaying Turbulent Magnetic Field" 
2014arXiv1412.1940A,% Adams & Osano "Magnetogenesis Experiments Using a Modified Chaplygin Gas EoS" 
2012PhRvD..86j3005K,% Kahniashvili "Evolution of inflation-generated magnetic field through phase transitions" 
2013PhRvD..87h3007K,% Kahniashvili "Evolution of primordial magnetic fields from phase transitions" 
2012ApJ...759...54T,% Tevzadze "Magnetic Fields from QCD Phase Transitions" 
2011PhRvE..84a6406C,% Candelaresi & Brandenburg "Decay of helical and nonhelical magnetic knots" 
2010PhRvD..81l3002K,% Kahniashvili "Numerical simulations of the decay of primordial magnetic turbulence" 
2010PhRvE..81c6401D,% Del Sordo Candelaresi & Brandenburg "Magnetic-field decay of three interlocked flux rings with zero linking number" 
2005AN....326..393C,% Christensson Hindmarsh & Brandenburg }% "Scaling laws in decaying helical hydromagnetic turbulence" 
2004PhRvE..69e6303Y% Yousef Haugen & Brandenburg "Self-similar scaling in decaying numerical turbulence" 
}.
\end{enumerate}

\item
{\bf Planet formation and inertial particles}

\begin{enumerate}

%d u s t  &  p l a n e t
\item
{\em Planet formation} \citep{
2016ApJ...817..102L,% Lyra, Richert, et al
2016arXiv160308523Y,% Yang & Johansen
2016arXiv160400791L,% Lambrechts
2015SciA....115109J,% Johansen, Mac Low, ...
2015ApJ...804...95R,% Richert, Lyra, ...
2015MNRAS.453.4232G,% Gibbons, Mamatsashvili, Rice
2015ApJ...814..155B,% Baehr & Klahr
2015A&A...579A..43C,% Carrera Johansen & Davies "How to form planetesimals from mm-sized chondrules and chondrule aggregates" 
2014ebi..confP2.13C,% Carrera
2014IAUS..299..177Y,% Yang & Johansen
2014ApJ...792...86Y,% Yang & Johansen "On the Feeding Zone of Planetesimal Formation by the Streaming Instability" 
2014ApJ...791...62M,% McNally "Temperature Fluctuations Driven by Magnetorotational Instability in Protoplanetary Disks" 
2014prpl.conf..411T,% Turner "Transport and Accretion in Planet-Forming Disks"
2014MNRAS.442..361G,% Gibbons Mamatsashvili & Rice "Planetesimal formation in self-gravitating discs - the effects of particle self-gravity and back-reaction" 
2014IAUS..293..244D,% Dittrich
2013ApJ...763..117D,% Dittrich Klahr & Johansen "Gravoturbulent Planetesimal Formation: The Positive Effect of Long-lived Zonal Flows"
2013oss..prop...80H,% Hubbard NASA proposal
2013Natur.499..184L,% Lyra & Kuchner "Formation of sharp eccentric rings in debris disks with gas but without planets" 
2012MNRAS.426.1444G,% Gibbons Rice & Mamatsashvili "Planetesimal formation in self-gravitating discs" 
2012MNRAS.426..784H,% Hubbard "Turbulence-induced collisional velocities and density enhancements: large inertial range results from shell models" 
2012ApJ...750...34H,% Horn "Orbital Migration of Interacting Low-mass Planets in Evolutionary Radiative Turbulent Models" 
2012arXiv1204.6322L,% Lyra & Kuchner "Sharp eccentric rings in planetless hydrodynamical models of debris disks" 
2012ApJ...748...79Y,% Yang Mac Low & Menou "Planetesimal and Protoplanet Dynamics in a Turbulent Protoplanetary Disk: Ideal Stratified Disks" 
2012A&A...544A..32L,% Lambrechts & Johansen "Rapid growth of gas-giant cores by pebble accretion"
2012A&A...537A.125J,% Johansen Youdin & Lithwick "Adding particle collisions to the formation of asteroids and Kuiper belt objects via streaming instabilities" 
2011A&A...534A.107F,% Fromang Lyra & Masset "Meridional circulation in turbulent protoplanetary disks" 
2011A&A...529A..62J,% Johansen Klahr & Henning "High-resolution simulations of planetesimal formation in turbulent protoplanetary discs" 
2011ESS.....2.3302L,% Michiel Lambrechts
2011IAUS..274...50J,% Johansen et al
2011IAUS..276...89J,% Johansen
2011A&A...527A.138L,% Lyra & Klahr "The baroclinic instability in the context of layered accretion. Self-sustained vortices and their magnetic stability in local compressible unstratified models of protoplanetary disks" 
2010ApJ...715L..68L,% Lyra Paardekooper & Mac Low "Orbital Migration of Low-mass Planets in Evolutionary Radiative Models: Avoiding Catastrophic Infall" 
2010MNRAS.404..475J,% Johansen & Lacerda "Prograde rotation of protoplanets by accretion of pebbles in a gaseous environment" 
2009ApJ...707.1233Y,% Yang Mac Low & Menou "Planetesimal and Protoplanet Dynamics in a Turbulent Protoplanetary Disk: Ideal Unstratified Disks" 
2009ApJ...704L..75J,% Johansen Youdin & Mac Low "Particle Clumping and Planetesimal Formation Depend Strongly on Metallicity"
2009ApJ...704.1239O,% Oishi & Mac Low "On Hydrodynamic Motions in Dead Zones" 
2009ApJ...701.1269B,% Børve Speith & Trulsen "Numerical Dissipation in RSPH Simulations of Astrophysical Flows with Application to Protoplanetary Disks" 
2009A&A...493.1125L,% Lyra "Standing on the shoulders of giants. Trojan Earths and vortex trapping in low mass self-gravitating protoplanetary disks of gas and solids" 
2009A&A...497..869L,% Lyra "Planet formation bursts at the borders of the dead zone in 2D numerical simulations of circumstellar disks" 
2008A&A...491L..41L,% Lyra "Embryos grown in the dead zone. Assembling the first protoplanetary cores in low mass self-gravitating circumstellar disks of gas and solids" 
2008A&A...486..597J,% Johansen "A coagulation-fragmentation model for the turbulent growth and destruction of preplanetesimals" 
2008A&A...479..883L,% Lyra "Global magnetohydrodynamical models of turbulence in protoplanetary disks. I. A cylindrical potential on a Cartesian grid and transport of solids" 
2008ASPC..398..219Y,% Youdin & Johansen "Planetesimal Formation with Particle Feedback" 
2007ApJ...670..805O,% Oishi Mac Low & Menou "Turbulent Torques on Protoplanets in a Dead Zone" 
2007Natur.448.1022J,% Johansen "Rapid planetesimal formation in turbulent circumstellar discs" 
2007arXiv0708.3893J,% Johansen "Supplementary Information for ``Rapid planetesimal formation in turbulent circumstellar discs''" 
2007ApJ...662..627J,% Johansen & Youdin "Protoplanetary Disk Turbulence Driven by the Streaming Instability: Nonlinear Saturation and Particle Concentration" 
2007ApJ...662..613Y,% Youdin & Johansen "Protoplanetary Disk Turbulence Driven by the Streaming Instability: Linear Evolution and Numerical Methods" 
2006ApJ...643.1219J,% Johansen Henning & Klahr "Dust Sedimentation and Self-sustained Kelvin-Helmholtz Turbulence in Protoplanetary Disk Midplanes" 
2006ApJ...636.1121J,% Johansen Klahr & Henning "Gravoturbulent Formation of Planetesimals" 
2006MNRAS.370L..71J,% Johansen Klahr & Mee "Turbulent diffusion in protoplanetary discs: the effect of an imposed magnetic field" 
2005ApJ...634.1353J,% Johansen & Klahr "Dust Diffusion in Protoplanetary Disks by Magnetorotational Turbulence" 
2004A&A...417..361J,% Johansen Andersen & Brandenburg "Simulations of dust-trapping vortices in protoplanetary discs" 
2005prpl.conf.8004J% Johansen Klahr & Henning "Gravoturbulent Formation of Planetesimals" 
}.

\item %p a r t
{\em Inertial particles} \citep{
2016arXiv160408169L,% Li
2016arXiv160300703M,% Mitra, Haugen, Rogachevskii
2015ApJ...804...35R,% Raettig Klahr & Lyra "Particle Trapping and Streaming Instability in Vortices" 
2014ApJ...797..101P,% Pan & Padoan "Turbulence-induced Relative Velocity of Dust Particles. IV. The Collision Kernel" 
2013ApJ...776...12P,% Pan & Padoan "Turbulence-induced Relative Velocity of Dust Particles. I. Identical Particles" 
2014ApJ...792...69P,% Pan Padoan & Scalo "Turbulence-induced Relative Velocity of Dust Particles. III. The Probability Distribution" 
2014ApJ...791...48P,% Pan Padoan & Scalo "Turbulence-induced Relative Velocity of Dust Particles. II. The Bidisperse Case"
2013ApJ...773..120M,% Mitra Wettlaufer & Brandenburg "Can Planetesimals Form by Collisional Fusion?" 
2012PhFl...24g5106H,% Haugen "Detection of turbulent thermal diffusion of particles in numerical simulations" 
2011arXiv1109.1135H,% Hydle Rivedal Granskogen Bjørnstad & Haugen "The effect of turbulence on the particle impaction on a cylinder in a cross flow" 
2010arXiv1008.5040H% Haugen "Particle impaction efficiency and size distribution in a MSWI super heater tube bundle" 
}.
\end{enumerate}

\item
{\bf Accretion discs and shear flows}

\begin{enumerate}
\item %m r i
{\em Accretion discs and shear flows} \citep{
2016arXiv160401546T,% Tian & Chen
2015arXiv150400066R,% Richert "On shocks driven by high-mass planets in radiatively inefficient disks. I. Two-dimensional global disk simulations" 
2014ApJ...789...77L,% Lyra "Convective Overstability in Accretion Disks: Three-dimensional Linear Analysis and Nonlinear Saturation" 
2015A&A...574A..10L,% Lyra Turner & McNally "Rossby wave instability does not require sharp resistivity gradients" 
2014A&A...567A.139V,% V�is�l� "Quantifying the effect of turbulent magnetic diffusion on the growth rate of the magneto-rotational instability" 
2013EPJWC..4604003L,% Lyra "Elliptic and magneto-elliptic instabilities" 
2013ApJ...765..115R,% Raettig Lyra & Klahr "A Parameter Study for Baroclinic Vortex Amplification" 
2013IAUS..290..201D,% Di Bernardo & Torkelsson "Wave modes from the magnetorotational instability in accretion discs" 
2012MNRAS.426.1107L,% Latter & Papaloizou "Hysteresis and thermal limit cycles in MRI simulations of accretion discs" 
2012ApJ...758..103G,% Gaburov Johansen & Levin "Magnetically Levitating Accretion Disks around Supermassive Black Holes" 
2012ApJ...756...62L,% Lyra & Mac Low "Rossby Wave Instability at Dead Zone Boundaries in Three-dimensional Resistive Magnetohydrodynamical Global Models of Protoplanetary Disks" 
2011MNRAS.418.1356R,% Rice "Stability of self-gravitating discs under irradiation" 
2012MNRAS.420.1640R,% Rice Forgan & Armitage "Convergence of smoothed particle hydrodynamics simulations of self-gravitating accretion discs: sensitivity to the implementation of radiative cooling" 
2011ApJ...740...18O,% Oishi \& Mac Low "Magnetorotational Turbulence Transports Angular Momentum in Stratified Disks with Low Magnetic Prandtl Number but Magnetic Reynolds Number above a Critical Value" 
2011ApJ...735..122F,% Flock "Turbulence and Steady Flows in Three-dimensional Global Stratified Magnetohydrodynamic Simulations of Accretion Disks" 
2010ApJ...719...67K,% Käpylä "Angular Momentum Transport in Convectively Unstable Shear Flows" 
2011MNRAS.413..901K,% Käpylä & Korpi "Magnetorotational instability driven dynamos at low magnetic Prandtl numbers" 
2010EAS....41..167F,% Fromang "MHD turbulence in accretion disks: the importance of the magnetic Prandtl number" 
2010AN....331...34K,% Korpi Käpylä & Väisälä "Influence of Ohmic diffusion on the excitation and dynamics of MRI" 
2009ApJ...697.1269J,% Johansen Youdin & Klahr "Zonal Flows and Long-lived Axisymmetric Pressure Bumps in Magnetorotational Turbulence" 
2009MNRAS.397...64H,% Heinemann & Papaloizou "The excitation of spiral density waves through turbulent fluctuations in accretion discs - II. Numerical simulations with MRI-driven turbulence" 
2009ASPC..406....9F,% Fromang "Numerical Simulations of MHD Turbulence in Accretion Disks" 
2008A&A...490..501J,% Johansen & Levin "High accretion rates in magnetised Keplerian discs mediated by a Parker instability driven dynamo" 
2008ApJ...685..406W,% Workman & Armitage "Interaction of the Magnetorotational Instability with Hydrodynamic Turbulence in Accretion Disks" 
2007A&A...476.1123F,% Fromang "MHD simulations of the magnetorotational instability in a shearing box with zero net flux. II. The effect of transport coefficients" 
2007A&A...476.1113F,% Fromang & Papaloizou "MHD simulations of the magnetorotational instability in a shearing box with zero net flux. I. The issue of convergence" 
2006ApJ...653..558O,% Ouyed "Three-Dimensional Simulations of the Reorganization of a Quark Star's Magnetic Field as Induced by the Meissner Effect" 
2005AN....326..787B% Brandenburg "Turbulence and its parameterization in accretion discs" 
}.

\item %s h e a r
{\em Shear flows} \citep{
2016arXiv160502433B,% Bhat, Ebrahimi, Blackman
2015ApJ...806..118S,% Singh & Jingade "Numerical studies of dynamo action in a turbulent shear flow" 
2014PhPl...21g2126M,% Modestov "Evolution of the magnetic field generated by the Kelvin-Helmholtz instability" 
2009AN....330..797V,% Vermersch & Brandenburg "Shear-driven magnetic buoyancy oscillations" 
2009PhRvE..79a6302K,% Käpylä Mitra & Brandenburg "Numerical study of large-scale vorticity generation in shear-flow turbulence" 
2008AGUSMSP21A..04G,% Green et al, American Geophysical Union, Spring Meeting
2008PhRvL.100r4501Y,% Yousef "Generation of Magnetic Field by Combined Action of Turbulence and Shear" 
2008MNRAS.386.1038B,% Babkovskaia Brandenburg & Poutanen "Boundary layer on the surface of a neutron star" 
2004AIPC..733..122B% Brandenburg Dintrans & Haugen "Shearing and embedding box simulations of the magnetorotational instability" 
}.
\end{enumerate}

\item
{\bf Solar physics} %s o l

\begin{enumerate}
\item
{\em Coronal heating and coronal mass ejections} \citep{
2016A&A...589A..86B,% Bourdin
2016A&A...587A...4T,% Bourdin
2015NatPh..11..492C,% Chen, Peter, Bingert, Cheung
2015PhRvL.115i5001S,% Smiet, Candelaresi, Thompson. ...
2014IAUS..302..134W,% Warnecke & Brandenburg "Coronal influence on dynamos" 
2014CEAB...38....1B,% Bourdin
2013yCat..35559123B,% Bourdin Bingert & Peter "3D-MHD model of a solar active region corona (Bourdin+, 2013)" 
2013A&A...555A.123B,% Bourdin Bingert & Peter "Observationally driven 3D magnetohydrodynamics model of the solar corona above an active region" 
2013yCat..35550123B,% Bourdin et al
2013A&A...554A..39V,% van Wettum Bingert & Peter "Parameterisation of coronal heating: spatial distribution and observable consequences"
2013A&A...550A..30B,% Bingert & Peter "Nanoflare statistics in an active region 3D MHD coronal model"
2012A&A...548A...1P,% Peter & Bingert "Constant cross section of loops in the solar corona"
2012A&A...537A.152P,% Peter Bingert & Kamio "Catastrophic cooling and cessation of heating in the solar corona" 
2012JSWSC...2A..11W,% Warnecke "Magnetic twist: a source and property of space weather" 
2012IAUS..286..154W,% Warnecke "Coronal ejections from convective spherical shell dynamos" 
2011IAUS..273..256W,% Warnecke & Brandenburg "Dynamo generated field emergence through recurrent plasmoid ejections" 
2011A&A...532A.112Z,% Zacharias Peter & Bingert "Ejection of cool plasma into the hot corona" 
2011A&A...531A..97Z,% Zacharias Peter & Bingert "Investigation of mass flows in the transition region and corona in a three-dimensional numerical model approach" 
2011IAUS..274..306W,% Warnecke Brandenburg & Mitra "Plasmoid ejections driven by dynamo action underneath a spherical surface" 
2011A&A...530A.112B,% Bingert & Peter "Intermittent heating in the solar corona employing a 3D MHD model" 
2011IAUS..271..407W,% Warnecke & Brandenburg "Recurrent flux emergence from dynamo-generated fields" 
2011A&A...534A..11W,% Warnecke Brandenburg & Mitra "Dynamo-driven plasmoid ejections above a spherical surface" 
2010A&A...523A..19W,% Warnecke & Brandenburg "Surface appearance of dynamo-generated large-scale fields" 
2010AdSpR..45..310B,% Bingert "On the nature of coronal loops above the quiet sun network" 
2009AdSpR..43.1451Z,% Zacharias Bingert & Peter "Spectral analysis of 3D MHD models of coronal structures" 
2009MmSAI..80..654Z% Zacharias Bingert & Peter "Doppler shifts in the transition region and corona. Mass cycle between the chromosphere and the corona" 
}.

\item %h e l
{\em Helical dynamos, helical turbulence, and catastrophic quenching} \citep{
2016arXiv160105246C,% Cole et al
2016ApJ...816...28K,% Karak
2015ApJ...803...95K,% Karak Kitchatinov & Brandenburg "Hysteresis between Distinct Modes of Turbulent Dynamos" 
2015AN....336...91B,% Brandenburg & Hubbard "Dynamical quenching with non-local alpha and downward pumping" 
2014MNRAS.445.2930S,% Subramanian & Brandenburg "Traces of large-scale dynamo action in the kinematic stage" 
2014ApJ...786...91B,% Brandenburg & Stepanov "Faraday Signature of Magnetic Helicity from Reduced Depolarization" 
2014ApJ...791...12B,% Brandenburg "Magnetic Prandtl Number Dependence of the Kinetic-to-magnetic Dissipation Ratio"
2014MNRAS.438.2954B,% Bhat Blackman & Subramanian "Resilience of helical fields to turbulent diffusion - II. Direct numerical simulations"
2014ApJ...786...51C,% Chian "Detection of Coherent Structures in Photospheric Turbulent Flows" 
2014arXiv1403.1328P,% Park
2013PhRvE..87e3110P,% Park
2013SSRv..178..163B,% Brandenburg & Lazarian "Astrophysical Hydromagnetic Turbulence"
2013PhDT.......195P,% Park "Theory and Simulation of Magnetohydrodynamic Dynamos and Faraday Rotation for Plasmas of General Composition" 
2013MNRAS.434.2020P,% Park "Influence of initial conditions on the large-scale dynamo growth rate" 
2014MNRAS.444.3837P,% Park "Influence of small-scale E<SUB>M</SUB> and H<SUB>M</SUB> on the growth of large-scale magnetic field" 
2013PhRvE..87d3104C,% Candelaresi & Brandenburg "Kinetic helicity needed to drive large-scale dynamos" 
2013MNRAS.434.2020P,% Park "Influence of initial conditions on large scale dynamo growth rate" 
2013MNRAS.429.1686D,% Del Sordo Guerrero & Brandenburg "Turbulent dynamos with advective magnetic helicity flux" 
2013IAUS..294..387B,% Brandenburg "Non-linear and chaotic dynamo regimes" 
2013JFM...729..309R,% Rempel "Coherent structures and the saturation of a nonlinear dynamo" 
2013IAUS..294..353C,% Candelaresi & Brandenburg "Topological constraints on magnetic field relaxation" 
2012IAUS..286...49C,% Candelaresi & Brandenburg "Magnetic helicity fluxes and their effect on stellar dynamos" 
2012SSRv..169..123B,% Brandenburg Sokoloff & Subramanian "Current Status of Turbulent Dynamo Theory. From Large-Scale to Small-Scale Dynamos" 
2012PhyS...86a8405R,% Rempel C-L Chian & Brandenburg "Lagrangian chaos in an ABC-forced nonlinear dynamo" 
2012MNRAS.423.2120P,% Park & Blackman "Simulations of a magnetic fluctuation driven large-scale dynamo and comparison with a two-scale model" 
2012MNRAS.419..913P,% Park & Blackman "Comparison between turbulent helical dynamo simulations and a non-linear three-scale theory" 
2012IAUS..286...37B,% Brandenburg & Guerrero "Cycles and cycle modulations" 
2011Prama..77...67B,% Brandenburg "Chandrasekhar-Kendall functions in astrophysical dynamos" 
2012ApJ...748...51H,% Hubbard & Brandenburg "Catastrophic Quenching in alphaOmega Dynamos Revisited" 
2011ApJ...735L...9R,% Rempel Chian & Brandenburg "Lagrangian Coherent Structures in Nonlinear Dynamos" 
2011A&A...526A.138M,% Mitra "Alleviating alpha quenching by solar wind and meridional flows" 
2011PhPl...18a2903C,% Candelaresi "Magnetic helicity transport in the advective gauge family" 
2011ApJ...727...11H,% Hubbard & Brandenburg "Magnetic Helicity Flux in the Presence of Shear" 
2011AN....332...51B,% Brandenburg "Dissipation in dynamos at low and high magnetic Prandtl numbers" 
2011A&A...525A...5C,% Chatterjee Guerrero & Brandenburg "Magnetic helicity fluxes in interface and flux transport dynamos" 
2011A&A...535A..48H,% Hubbard Rheinhardt & Brandenburg "The fratricide of alphaOmega dynamos by their alpha<SUP>2</SUP> siblings" 
2011IAUS..271..369C,% Candelaresi Sordo & Brandenburg "Influence of Magnetic Helicity in MHD" 
2011IAUS..274..464C,% Candelaresi & Brandenburg "Magnetic helicity fluxes in alphaOmega dynamos" 
2011IAUS..274..461C,% Candelaresi Del Sordo & Brandenburg "Decay of trefoil and other magnetic knots" 
2011IAUS..274..402B,% Brandenburg "Simulations of astrophysical dynamos" 
2011AGUFMSH54A..03G,% Guerrero "Theoretical comparison of plasma and magnetic feature tracking (MFT) flows: a perspective for assimilating meridional flow data in flux-transport models" 
2010GApFD.104..577H,% Hubbard & Brandenburg "Magnetic helicity fluxes in an alpha2 dynamo embedded in a halo" 
2010AN....331..130M,% Mitra "Equatorial magnetic helicity flux in simulations with different gauges" 
2010IAUS..264..197M,% Mitra "Oscillatory migratory large-scale fields in mean-field and direct simulations" 
2010cosp...38.2826B,% Brandenburg "Surface appearance of dynamo-generated large-scale fields" 
2010MNRAS.409.1619G,% Guerrero Chatterjee & Brandenburg "Shear-driven and diffusive helicity fluxes in alphaOmega dynamos" 
2010MNRAS.401..347B,% Brandenburg "Magnetic field evolution in simulations with Euler potentials" 
2010PhST..142a4028B,% Brandenburg "Turbulent transport in hydromagnetic flows" 
2010GApFD.104..591C,% Chatterjee Brandenburg & Guerrero "Can catastrophic quenching be alleviated by separating shear and alpha effect?" 
2010AN....331...14R,% R�dler & Brandenburg "Mean electromotive force proportional to mean flow in MHD turbulence" 
2009MNRAS.400..509R,% Rempel Proctor & Chian "A novel type of intermittency in a non-linear dynamo in a compressible flow" 
2009ApJ...699.1059K,% Käpylä & Brandenburg "Turbulent Dynamos with Shear and Fractional Helicity" 
2009SSRv..144...87B,% Brandenburg "Advances in Theory and Simulations of Large-Scale Dynamos" 
2009IAUS..259..159B,% Brandenburg "Paradigm shifts in solar dynamo modeling" 
2009MNRAS.398.1414B,% Brandenburg Candelaresi & Chatterjee "Small-scale magnetic helicity losses from a mean-field dynamo" 
2009ApJ...697.1206B,% Brandenburg "Large-scale Dynamos at Low Magnetic Prandtl Numbers" 
2009PPCF...51l4043B,% Brandenburg "The critical role of magnetic helicity in astrophysical large-scale dynamos" 
2009MNRAS.399..273S,% Sur & Brandenburg "The role of the Yoshizawa effect in the Archontis dynamo" 
2009odsm.book...87B,% Brandenburg "Advances in Theory and Simulations of Large-Scale Dynamos" 
2009ASPC..416..433B,% Brandenburg "From Fibril to Diffuse Fields During Dynamo Saturation" 
2008PhRvE..77b6405R,% R�dler & Brandenburg "alpha -effect dynamos with zero kinetic helicity" 
2008MNRAS.391.1477T,% Tilgner & Brandenburg "A growing dynamo from a saturated Roberts flow dynamo" 
2008AN....329..725B,% Brandenburg "The dual role of shear in large-scale dynamos" 
2008A&A...482..739B,% Brandenburg R�dler & Schrinner "Scale dependence of alpha effect and turbulent diffusivity" 
2008PhST..130a4016B,% Brandenburg "Turbulent protostellar discs" 
2007NJPh....9..305B,% Brandenburg & Käpylä "Magnetic helicity effects in astrophysical and laboratory dynamos" 
2007AN....328..507B,% Brandenburg & Subramanian "Simulations of the anisotropic kinetic and magnetic alpha effects" 
2007HiA....14..291B,% Brandenburg "Why coronal mass ejections are necessary for the dynamo" 
2007IAUS..239..457B,% Brandenburg "Near-surface shear layer dynamics" 
2006IAUJD...8E..62B,% Brandenburg "Why coronal mass ejections are necessary for the dynamo" 
2006AN....327..461B,% Brandenburg "Magnetic helicity in primordial and dynamo scenarios of galaxies" 
2006A&A...448L..33S,% Shukurov "Galactic dynamo and helicity losses through fountain flow" 
2006MNRAS.370..415M,% Mee & Brandenburg "Turbulence from localized random expansion waves" 
2006MNRAS.373..643S,% Snodin "Simulating field-aligned diffusion of a cosmic ray gas" 
2006A&A...450..437B,% Brandenburg & Dintrans "Nonaxisymmetric stability in the shearing sheet approximation" 
2006ASPC..354..121B,% Brandenburg "Location of the Solar Dynamo and Near-Surface Shear" 
2005AN....326..174B,% Brandenburg "The problem of small and large scale fields in the solar dynamo" 
2005AN....326..400B,% Brandenburg & Subramanian "Strong mean field dynamos require supercritical helicity fluxes" 
2005A&A...439..835B,% Brandenburg & Subramanian "Minimal tau approximation and simulations of the alpha effect" 
2005astro.ph.12639B,% Brandenburg & K�pyl� "Connection between active longitudes and magnetic helicity" 
2005astro.ph.12638B,% Brandenburg "Distributed versus tachocline dynamos" 
2005HiA....13..101B,% Brandenburg & Blackman "Ejection of Bi-Helical Fields from the Sun" 
2005PhR...417....1B,% Brandenburg & Subramanian "Astrophysical magnetic fields and nonlinear dynamo theory" 
2005LNP...664..219B,% Brandenburg "Importance of Magnetic Helicity in Dynamos" 
2005ApJ...625..539B,% Brandenburg "The Case for a Distributed Solar Dynamo Shaped by Near-Surface Shear" 
2004IAUS..223...57B,% Brandenburg Sandin & K�pyl� "Helical coronal ejections and their role in the solar cycle" 
2004PhRvE..69e6407B,% Brandenburg & Matthaeus "Magnetic helicity evolution in a periodic domain with imposed field" 
2004A&A...427...13B,% Brandenburg & Sandin "Catastrophic alpha quenching alleviated by helicity flux and shear" 
2003A&A...407....7Y% Yousef & Brandenburg "Relaxation of writhe and twist of a bi-helical magnetic field" 
}.

\item %n e m p i
{\em Helioseismology} \citep{
2014ApJ...795L...8S,% Singh Brandenburg & Rheinhardt "Fanning Out of the Solar f-mode in the Presence of Non-uniform Magnetic Fields?" 
2015MNRAS.447.3708S% Singh "Properties of p and f modes in hydromagnetic turbulence" 
}.

\item %n e m p i
{\em Strongly stratified MHD turbulence and NEMPI} \citep{
2016SSRv..tmp....5C,% Cameron
2016A&A...589A.125W,% Warnecke
2015IAUGA..2254998J,% Jabbari
2014A&A...562A..53B,% Brandenburg "Mean-field and direct numerical simulations of magnetic flux concentrations from vertical field" 
2014A&A...564A...2L,% Losada "Magnetic flux concentrations in a polytropic atmosphere" 
2014MNRAS.445..761M,% Mitra "Intense bipolar structures from stratified helical dynamos"
2014AGUFMSH41B4131J,% Jabbari
2014A&A...568A.112J,% Jabbari "Magnetic flux concentrations from dynamo-generated fields" 
2015ApJ...805..166J,% Jabbari "Bipolar magnetic spots from dynamos in stratified spherical shell turbulence" 
2013ApJ...776L..23B,% Brandenburg Kleeorin & Rogachevskii "Self-assembly of shallow magnetic spots through strongly stratified turbulence" 
2013ApJ...777L..37W,% Warnecke "Bipolar Magnetic Structures Driven by Stratified Turbulence with a Coronal Envelope" 
2013A&A...556A.106J,% Jabbari "Surface flux concentrations in a spherical alpha<SUP>2</SUP> dynamo" 
2013SoPh..287..293K,% Kemel "Active Region Formation through the Negative Effective Magnetic Pressure Instability" 
2013PhST..155a4027K,% Kemel "Non-uniformity effects in the negative effective magnetic pressure instability" 
2012SoPh..280..321K,% Kemel "Spontaneous Formation of Magnetic Flux Concentrations in Stratified Turbulence" 
2012AN....333...95K,% Kemel "Properties of the negative effective magnetic pressure instability" 
2011PhRvE..84e6407K,% Kemel Brandenburg & Ji "Model of driven and decaying magnetic turbulence in a cylinder" 
2011IAUS..273...83K,% Kemel "The negative magnetic pressure effect in stratified turbulence" 
2011IAUS..274..473K,% Kemel "Turbulent magnetic pressure instability in stratified turbulence" 
2013A&A...556A..83L,% Losada "Competition of rotation and stratification in flux concentrations" 
2013IAUS..294..283K,% Käpylä "Flux concentrations in turbulent convection" 
2012A&A...548A..49L,% Losada "Rotational effects on the negative magnetic pressure instability" 
2012MNRAS.422.2465K,% Käpylä "Negative effective magnetic pressure in turbulent convection" 
2011ApJ...740L..50B,% Brandenburg "Detection of Negative Effective Magnetic Pressure Instability in Turbulence Simulations" 
2012ApJ...749..179B,% Brandenburg "The Negative Effective Magnetic Pressure in Stratified Forced Turbulence" 
2011SoPh..269....3R,% Rüdiger Kitchatinov & Brandenburg "Cross Helicity and Turbulent Magnetic Diffusivity in the Solar Convection Zone" 
2010AN....331....5B% Brandenburg Kleeorin & Rogachevskii "Large-scale magnetic flux concentrations from turbulent stresses" 
}.

\item %c o n
{\em Convection in Cartesian domains} \citep{
2013sf2a.conf..223F,% F�lix Audit & Dintrans "Towards 3D simulations of Cepheids stars" 
2013GApFD.107..244K,% K�pyl� Mantere & Brandenburg "Oscillatory large-scale dynamos from Cartesian convection simulations" 
2013IAUS..294..359G,% Getling "The flow helicity in quasi-orderedcellular convection" 
2012sf2a.conf..329F,% F�lix Audit & Dintrans "Pulsations-convection combination in stars" 
2013MNRAS.433.2278S,% Svedin Cuellar & Brandenburg "Data assimilation for stratified convection" 
2012MNRAS.420L...1G,% Guerrero "Plasma flow versus magnetic feature-tracking speeds in the Sun" 
2011sf2a.conf..215G,% Gastine & Dintrans "Nonlinear simulations of the convection-pulsation coupling" 
2011AN....332..876M,% Mantere Käpylä & Hackman "Dependence of the large-scale vortex instability on latitude, stratification, and domain size" 
2011ApJ...742...34K,% Käpylä Mantere & Hackman "Starspots due to Large-scale Vortices in Rotating Turbulent Convection" 
2011A&A...533A..40G,% Guerrero & Käpylä "Dynamo action and magnetic buoyancy in convection simulations with vertical shear" 
2011IAUS..272...32C,% Cantiello "3D MHD simulations of subsurface convection in OB stars" 
2011IAUS..273..200C,% Cantiello "Turbulence and magnetic spots at the surface of hot massive stars" 
2008A&A...484...29G,% Gastine & Dintrans "Direct numerical simulations of the kappa-mechanism. I. Radial modes in the purely radiative case" 
2008A&A...490..743G,% Gastine & Dintrans "Direct numerical simulations of the kappa-mechanism. II. Nonlinear saturation and the Hertzsprung progression" 
2010Ap&SS.328..245G,% Gastine & Dintrans "Numerical simulations of the kappa-mechanism with convection" 
2011A&A...530L...7G,% Gastine & Dintrans "A test of time-dependent theories of stellar convection" 
2011A&A...528A...6G,% Gastine & Dintrans "Convective quenching of stellar pulsations" 
2011IAUS..271..279B,% Brandenburg K�pyl� & Korpi "From convective to stellar dynamos" 
2008A&A...491..353K,% K�pyl� Korpi & Brandenburg "Large-scale dynamos in turbulent convection with shear" 
2009ApJ...697.1153K,% Käpylä Korpi & Brandenburg "Large-scale Dynamos in Rigidly Rotating Turbulent Convection" 
2010A&A...518A..22K,% Käpylä Korpi & Brandenburg "Open and closed boundaries in large-scale convective dynamos" 
2008ApJ...677L.149S,% Scharmer Nordlund & Heinemann "Convection and the Origin of Evershed Flows in Sunspot Penumbrae" 
2008CRPhy...9..757R,% Rieutord
2007ApJ...669.1390H,% Heinemann "MHD Simulations of Penumbra Fine Structure" 
2006A&A...448..731H,% Heinemann "Radiative transfer in decomposed domains" 
2004ASPC..325..165N,% Nordlund "Magnetohydrodynamics of the Solar Atmosphere" 
2004IAUS..223..239D% Dobler & Getling "Compressible magnetoconvection as the local producer of solar-type magnetic structures" 
}.

\item %s p h
{\em Global convection and dynamo simulations} \citep{
2015A&A...576A..26K,% Karak "Magnetically controlled stellar differential rotation near the transition from solar to anti-solar profiles" 
2014ApJ...796L..12W,% Warnecke "On The Cause of Solar-like Equatorward Migration in Global Convective Dynamo Simulations" 
2014ApJ...780L..22C,% Cole "An Azimuthal Dynamo Wave in Spherical Shell Convection" 
2010AN....331...73K,% Käpylä "Convective dynamos in spherical wedge geometry" 
2011AN....332..883K,% Käpylä Mantere & Brandenburg "Effects of stratification in spherical shell convection" 
2011A&A...531A.162K,% Käpylä "Reynolds stress and heat flux in spherical shell convection" 
2012ApJ...755L..22K,% Käpylä Mantere & Brandenburg "Cyclic Magnetic Activity due to Turbulent Convection in Spherical Wedge Geometry" 
2013ApJ...778...41K,% K�pyl� "Effects of Enhanced Stratification on Equatorward Dynamo Wave Propagation" 
2014A&A...570A..43K,% K�pyl� K�pyl� & Brandenburg "Confirmation of bistable stellar differential rotation profiles" 
2013IAUS..294..175M,% Mantere K�pyl� & Pelt "Role of longitudinal activity complexes for solar and stellar dynamos" 
2012SoPh..280..299W,% Warnecke "Ejections of Magnetic Structures Above a Spherical Wedge Driven by a Convective Dynamo with Differential Rotation" 
2013IAUS..294..307W,% Warnecke "Solar-like differential rotation and equatorward migration in a convective dynamo with a coronal envelope" 
2013ApJ...778..141W,% Warnecke "Spoke-like Differential Rotation in a Convective Dynamo with a Coronal Envelope" 
2009ApJ...697..923M,% Mitra "Turbulent Dynamos in Spherical Shell Segments of Varying Geometrical Extent" 
2010ApJ...719L...1M,% Mitra "Oscillatory Migrating Magnetic Fields in Helical Turbulence in Spherical Domains" 
2007AN....328.1118B,% Brandenburg "The helicity constraint in spherical shell dynamos" 
2006ApJ...638..336D,% Dobler Stix & Brandenburg "Magnetic Field Generation in Fully Convective Rotating Spheres" 
2005PEPI..153..124M,% McMillan & Sarson "Dynamo simulations in a spherical shell of ideal gas using a high-order cartesian magnetohydrodynamics code" 
2004IAUS..219..656D,% Dorch "A Magnetic Betelgeuse? Numerical Simulations of Non-Linear Dynamo Action" 
2004A&A...423.1101D,% Dorch "Magnetic activity in late-type giant stars: Numerical MHD simulations of non-linear dynamo action in Betelgeuse" 
2005ESASP.560..511D,% Dorch "Dynamo action in late-type giants" 
2003AGUFMGP11C0280M% McMillan
}.
\end{enumerate}

\item
{\bf Miscellanea}

\begin{enumerate}
\item %t e s t
{\em Turbulent transport and test-field method} \citep{
2016arXiv160103730W,% Warnecke
2015ApJ...811..135A,% Andrievsky "Negative magnetic eddy diffusivities from test-field method and multiscale stability theory" 
2015AN....336...32S,% Snellman "Testing turbulent closure models with convection simulations" 
2014ApJ...795...16K,% Karak "Quenching and Anisotropy of Hydromagnetic Turbulent Transport" 
2014MNRAS.441..116R,% Rheinhardt "Mean-field dynamo action from delayed transport" 
2014PhRvE..89c3009R,% R�diger & Brandenburg "alpha effect in a turbulent liquid-metal plane Couette flow" 
2013MNRAS.432.1651D,% Devlen Brandenburg & Mitra "A mean field dynamo from negative eddy diffusivity" 
2004PhFl...16.1020B,% Brandenburg Käpylä & Mohammed "Non-Fickian diffusion and tau approximation from numerical turbulence" 
2008ApJ...676..740B,% Brandenburg "Magnetic Diffusivity Tensor and Dynamo Effects in Rotating and Shearing Turbulence" 
2008ApJ...687L..49B,% Brandenburg "Magnetic Quenching of alpha and Diffusivity Tensors in Helical Turbulence" 
2009MNRAS.395.1599B,% Brandenburg Svedin & Vasil "Turbulent diffusion with rotation or magnetic fields" 
2012A&A...539A..35B,% Brandenburg R�dler & Kemel "Mean-field transport in stratified and/or rotating turbulence" 
2012A&A...545C...1B,% Brandenburg R�dler & Kemel "Mean-field transport in stratified and/or rotating turbulence (Corrigendum)" 
2013ApJ...762..127B,% Brandenburg "New Scaling for the Alpha Effect in Slowly Rotating Turbulence" 
2013GApFD.107..207B,% Brandenburg & Rädler "Yoshizawa's cross-helicity effect and its quenching" 
2009A&A...505..955S,% Snellman "Reynolds stresses from hydrodynamic turbulence with shear and rotation" 
2012AN....333...78S,% Snellman "Verification of Reynolds stress parameterizations from simulations" 
2012PhyS...86a8406S,% Snellman "Mean-field closure parameters for passive scalar turbulence" 
2012AN....333..230K,% Kitchatinov & Brandenburg "Transport of angular momentum and chemical species by anisotropic mixing in stellar radiative interiors" 
2010A&A...520A..28R,% Rheinhardt & Brandenburg "Test-field method for mean-field coefficients with MHD background" 
2012AN....333...71R,% Rheinhardt & Brandenburg "Modeling spatio-temporal nonlocality in mean-field dynamos" 
2011PhRvE..84e6314R,% Rogachevskii "Pumping velocity in homogeneous helical turbulence with shear" 
2011PhRvE..84d6321R,% Rädler "Mean-field diffusivities in passive scalar and magnetic transport in irrotational flows" 
2011ASInC...2..137C,% Chatterjee "Alpha effect due to magnetic buoyancy instability of a horizontal magnetic layer" 
2010HiA....15..432B,% Brandenburg & Del Sordo "Turbulent diffusion and galactic magnetism" 
2010PhRvE..82a6304M,% Madarassy & Brandenburg "Calibrating passive scalar transport in shear-flow turbulence" 
2010MNRAS.402.1458K,% K�pyl� Korpi & Brandenburg "The alpha effect in rotating convection with sinusoidal shear" 
2009ApJ...706..712H,% Hubbard & Brandenburg "Memory Effects in Turbulent Transport" 
2009MNRAS.398.1891H,% Hubbard "The alpha effect with imposed and dynamo-generated magnetic fields" 
2009MNRAS.393..113R,% R�dler & Brandenburg "Mean-field effects in the Galloway-Proctor flow" 
2009A&A...500..633K,% Käpylä Korpi & Brandenburg "Alpha effect and turbulent diffusion from convection" 
2009A&A...495....1M,% Mitra "Alpha effect and diffusivity in helical turbulence with shear" 
2009AN....330...92L,% Liljeström "Turbulent stresses as a function of shear rate in a local disk model" 
2008MNRAS.385L..15S,% Sur Brandenburg & Subramanian "Kinematic alpha-effect in isotropic turbulence simulations" 
2007AN....328.1006K,% Käpylä & Brandenburg "Turbulent viscosity and Lambda-effect from numerical turbulence models" 
2008A&A...488....9K,% Käpylä & Brandenburg "Lambda effect from forced turbulence simulations" 
2007MNRAS.376.1238S,% Sur Subramanian & Brandenburg "Kinetic and magnetic alpha-effects in non-linear dynamo theory" 
2006A&A...459..935H,% Hupfer Käpylä & Stix "Reynolds stresses and meridional circulation from rotating cylinder simulations" 
2003A&A...411..321Y% Yousef Brandenburg & Rüdiger "Turbulent magnetic Prandtl number and magnetic diffusivity quenching from simulations" 
}.

\item
{\em Hydrodynamic and MHD instabilities} \citep{
2012IAUS..286...65D,% Del Sordo "Spontaneous chiral symmetry breaking in the Tayler instability" 
2011PhRvE..84b5403C,% Chatterjee "Spontaneous chiral symmetry breaking by hydromagnetic buoyancy" 
2011A&A...534A..46C,% Chatterjee "Alpha effect due to buoyancy instability of a magnetic layer" 
2011ApJ...737...62B,% Bejarano Gómez & Brandenburg "Shear-driven Instabilities in Hall-magnetohydrodynamic Plasmas" 
2005astro.ph.12409B,% Brandenburg & Ruediger "The angular momentum transport by the strato-rotational instability in simulated Taylor-Couette flows" 
2004IAUS..223...57B,% Brandenburg Sandin & K�pyl� "Helical coronal ejections and their role in the solar cycle" 
2003eclm.book..269B% Brandenburg "Computational aspects of astrophysical MHD and turbulence" 
}.

%h y d r o
\item
{\em Hydrodynamic turbulence} \citep{
2016PhRvE..93c3125Y,% Yokoi & Brandenburg
2015arXiv151108206A,% Aiyer, Subramanian, Bhat
2012AN....333..195B,% Brandenburg & Petrosyan "Kinetic helicity decay in linearly forced turbulence" 
2011IAUS..274..373S,% Del Sordo & Brandenburg "How can vorticity be produced in irrotationally forced flows?" 
2011A&A...528A.145D,% Del Sordo & Brandenburg "Vorticity production through rotation, shear, and baroclinicity" 
2011RPPh...74d6901B,% Brandenburg & Nordlund "Astrophysical turbulence modeling" 
2004PhRvE..70b6405H,% Haugen & Brandenburg "Inertial range scaling in numerical turbulence with hyperviscosity" 
2006PhFl...18g5106H,% Haugen & Brandenburg "Hydrodynamic and hydromagnetic energy spectra from large eddy simulations" 
2004physics...4118B,% Brandenburg K�pyl� & Mohammed "Passive scalar diffusion as a damped wave" 
2004PhRvE..70e6301P% Pearson "Delayed correlation between turbulent energy injection and dissipation" 
}.

\item
{\em Turbulent combustion, front propagation, radiation \& ionization} \citep{
2016A&A...587A..90B,% Bhat & Brandenburg "Hydraulic effects in a radiative atmosphere with ionization" 
2015AtmRe.153...49B,% Babkovskaia "A study of aerosol activation at the cloud edge with high resolution numerical simulations" 
2015PhRvE..91b1001C,% Chaudhuri "Pair dispersion of turbulent premixed flame elements" 
2014A&A...571A..68B,% Barekat & Brandenburg "Near-polytropic stellar simulations with a radiative surface" 
2011arXiv1110.1163T,% Tarjei Jensen Haugen & Babkovskaia "Calculation of the Minimum Ignition Energy based on the ignition delay time" 
2011PhRvE..83a6304B,% Brandenburg Haugen & Babkovskaia "Turbulent front speed in the Fisher equation: Dependence on Damköhler number" 
2011JCoPh.230....1B,% Babkovskaia Haugen & Brandenburg "A high-order public domain code for direct numerical simulations of turbulent combustion" 
2004IJAsB...3..209B% Brandenburg & Multamaki
}.

\end{enumerate}
\end{enumerate}

%C o d e
\section{Code comparison \& reference}

The {\sc Pencil Code} has been quoted in other papers either for
detailed code comparison, in connection with related work,
or in comparison with other codes \citep{
2016arXiv160105945S,% Surville, Mayer, Lin
2016ApJ...822...55S,% Simon, Armitage, ...
2015A&A...580A..48S,% Sk{\'a}la, Baruffa, ...
2015MNRAS.452.3853M,% Mocz, Vogelsberger, ...
2015MNRAS.450...53H,% Hopkins
2015MNRAS.449.2718D,% Duffell, MacFadyen
2015A&C....11....1K,% Krumholz, Forbes
2015ApJ...807..143C,% Cheung, Boerner, Schrijver
2015ApJ...809..149A,% Augustson
2015SSRv..196..221S,% Schad, Jouve, ...
2015SSRv..196..303B,% Brun
2014SSRv..186..251N,% Norton, Charbonneau, Passos
2014sf2a.conf...45R,% Rieutord
2014arXiv1412.7318O,% Olshevsky Liang & Ham "Turbulent convection in the Sun: modeling in unstructured meshes" 
2014arXiv1411.1289S,% Sk�la "The 3D MHD code GOEMHD3 for large-Reynolds-number astrophysical plasmas" 
2014arXiv1409.7395H,% Hopkins "GIZMO: A New Class of Accurate, Mesh-Free Hydrodynamic Simulation Methods" 
2014arXiv1403.6349J,% Jenkins "Scoping Studies for NBI Launch Geometries on DEMO" 
2014FlDyR..46d1401L,% Lovelace & Romanova "Rossby wave instability in astrophysical discs" 
2014AdAst2014E...4R,% Recchi "Chemodynamical Simulations of Dwarf Galaxy Evolution" 
2014PhRvE..90d1003B,% Berera & Linkmann "Inverse cascades and the evolution of decaying magnetohydrodynamic turbulence" 
2014SSRv..186..251N,% Charbonneau
2014ARA&A..52..251C,% Charbonneau
2013JPhCS.440a2014C,% Charbonneau
2013arXiv1310.8417A,% Augustson
2013arXiv1310.3859G,% Gabbasov "Numerical simulations of the Kelvin-Helmholtz instability with the Gadget-2 SPH code" 
2013arXiv1311.0861I,% Kulikov, Igor "A new GPU-accelerated hydrodynamical code for numerical simulation of interacting galaxies" 
2013EAS....62...95F,% Fromang "MRI-driven angular momentum transport in protoplanetary disks" 
2013SSRv..178..141M,% Mart�nez Pillet "Solar Surface and Atmospheric Dynamics. The Photosphere" 
2013MNRAS.434.3526C,% Cavecchi "Flame propagation on the surfaces of rapidly rotating neutron stars during Type I X-ray bursts" 
2012arXiv1211.7121R,% Rein "A proposal for community driven and decentralized astronomical databases and the Open Exoplanet Catalogue"
2012JCoPh.231..919F,% Freytag "Simulations of stellar convection with CO5BOLD" 
2012ApJS..201...18M,% McNally Lyra & Passy "A Well-posed Kelvin-Helmholtz Instability Test and Comparison" 
2012PhRvE..86a6313B,% Bonanno "Breakdown of chiral symmetry during saturation of the Tayler instability" 
2012ApJS..200....6M,% Maron McNally & Mac Low "Phurbas: An Adaptive, Lagrangian, Meshless, Magnetohydrodynamics Code. I. Algorithm" 
2012ApJS..200....7M,% McNally Maron & Mac Low "Phurbas: An Adaptive, Lagrangian, Meshless, Magnetohydrodynamics Code. II. Implementation and Tests" 
2011SerAJ.183...87A,% Andic, A., Umbral Dots Observed in Photometric Images ...
2011A&A...531A..86V,% Walder
2011MNRAS.413L..76M,% McNally
2011ApJS..194...47V,% Stone
2011JCoPh.230.1035Z,% Ziegler
2010EAS....42..275H,% Hanasz "The PIERNIK MHD code - a multi-fluid, non-ideal extension of the relaxing-TVD scheme (I)" 
2010ascl.soft10060B,% Brandenburg & Dobler "Pencil Code: Finite-difference Code for Compressible Hydrodynamic Flows" 
2010POBeo..90..105R,% w/ E. Rovithis-Livaniou
2010ApJ...722.1437B,% w/ Stone
2010ApJS..189..142S,% w/ Stone
2010IAUS..264..507T,% Turck-Chieze
2009arXiv0911.0218G,% Garcia
2009arXiv0910.4386K,% Kley
2009A&A...499..633P,% Piontek Gressel & Ziegler "Multiphase ISM simulations: comparing NIRVANA and ZEUS" 
2009ApJS..182..468M,% Maron & Mac Low "Tuned Finite-Difference Diffusion Operators" 
2009Ap&SS.320..107H,% w/ Hawley
2009ApJ...691.1092L,% w/ Stone
2008CoPhC.179..289M,% w/ Y Matsumoto
2008ApJ...677..520M,% Maron Mac Low & Oishi "A Constrained-Transport Magnetohydrodynamics Algorithm with Near-Spectral Resolution" 
2008A&A...479L..33G,% Gellert Rüdiger & Elstner "Helicity generation and alpha-effect by Tayler instability with z-dependent differential rotation" 
2008NewAR..52...78K,% Klahr
2006MmSAI..77..411T,% Bigot
2006A&A...457..371F,% Fromang Hennebelle & Teyssier "A high order Godunov scheme with constrained transport and adaptive mesh refinement for astrophysical magnetohydrodynamics" 
2006MNRAS.370..529D,% de Val-Borro "A comparative study of disc-planet interaction" 
2006ApJ...639.1218T,%Turbulent Mixing in the Outer Solar Nebula
2005astro.ph..7313R,% Ruediger "Taylor-Couette flow: MRI, SHI and SRI" 
2004DDA....35.0407M% Maron "New Algorithms for Magnetohydrodynamics and Gravity that Emphasize Resolution and Speed." 
}.

\def\nat    {Nature}
\def\nar    {New Astron. Rev.}
\def\apss   {Astrophys. Space Sci.}
\def\araa   {Ann.\ Rev.\ Astron.\ Astrophys.}
\def\prd    {Phys.\ Rev.\ D}
\def\pre    {Phys.\ Rev.\ E}
\def\apj    {Astrophys.\ J.}
\def\apjl   {Astrophys.\ J.\ Lett.}
\def\apjs   {Astrophys.\ J.\ Supp.}
\def\mnras  {Month.\ Not.\ Roy.\ Astron.\ Soc.}
\def\physrep{Phys.\ Rep.}
\def\aap    {Astron.\ Astrophys.}
\def\jgr    {J.\ Geophys.\ Res.}
\def\grl    {Geophys.\ Res.\ Lett.}
\def\solphys{Sol.\ Phys.}
\def\ssr    {Space Sci.\ Ref.}
\def\memsai {Mem.\ Soc.\ Astr.\ Ital.}
\def\physscr{Phys.\ Scr.}

\bibliography{ref}

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